PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca28922.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | C3H | ||||||||
Protein Properties | Length: 323aa MW: 35983.7 Da PI: 8.1035 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.1 | 1.7e-09 | 48 | 72 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC+ ++ GtC+y +C+FaHg Dca28922.1 48 YKTKLCCKYRS-GTCPYVTNCNFAHG 72 9********99.*************9 PP | |||||||
2 | zf-CCCH | 18.7 | 3.2e-06 | 133 | 158 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ Dca28922.1 133 YKGRHCKKFYTQEGCPYGDSCTFLHD 158 78888******99************7 PP | |||||||
3 | zf-CCCH | 41.9 | 1.6e-13 | 203 | 228 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tGtC++G++C+FaHg Dca28922.1 203 WKTRICNKWETTGTCPFGPKCHFAHG 228 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 8.9E-9 | 44 | 78 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.8E-15 | 46 | 80 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-4 | 47 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.554 | 47 | 74 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-7 | 48 | 72 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-9 | 129 | 160 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-7 | 131 | 160 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.314 | 132 | 160 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.077 | 132 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-16 | 198 | 232 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-10 | 199 | 233 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.751 | 202 | 230 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.0E-9 | 202 | 229 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-10 | 203 | 228 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MESWGVTKDD AIWATEDEYT RWNKKSRLNS NSNSNSNSTS KAIGRMFYKT KLCCKYRSGT 60 CPYVTNCNFA HGLDELRNPP ENWQEIVAAH DEEQHQNQNH NHNSEQQQQH LQQIPIISTT 120 ESRGESHHSQ RSYKGRHCKK FYTQEGCPYG DSCTFLHDEQ SRSRESVAIS VTPALAPPSA 180 VVVGGGSASS SSVNVNSVKP SNWKTRICNK WETTGTCPFG PKCHFAHGWP ELHNFGGGTT 240 EGDCRESPAA TETKTAAGMA IKTDVAPTAS LEHHHHNHHH VGGGITSQRP SMVIKVVGRR 300 PHPKWKGPDK ISRIYGDWIG DIE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010671084.1 | 1e-127 | PREDICTED: zinc finger CCCH domain-containing protein 56 | ||||
Swissprot | Q84UQ3 | 8e-99 | C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A1S3ZU96 | 1e-115 | A0A1S3ZU96_TOBAC; zinc finger CCCH domain-containing protein 12-like isoform X1 | ||||
TrEMBL | A0A1S3ZUC5 | 1e-115 | A0A1S3ZUC5_TOBAC; zinc finger CCCH domain-containing protein 12-like isoform X2 | ||||
STRING | XP_010671084.1 | 1e-127 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 7e-83 | C3H family protein |