PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca28876.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

GeBP

Protein Properties

Length: 455aa MW: 48549.4 Da PI: 4.9762

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca28876.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	109.9	1.7e-34	105	205	2	96
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk..aksgkepsfskehdqkifelskk 94 lfqrlw++eDei lL+G++++++ +g ++d+ afy+++k++++++++k+qlveK+rrLKkK+++ +k + +gke++f+++hdq +fe+s+k Dca28876.1 105 LFQRLWTDEDEIELLRGFLEYTSARGGataaGHHHDTAAFYDQIKNKLQLEFNKNQLVEKLRRLKKKYRNVLSKmnSGNGKEFVFKSPHDQATFEISSK 203 79*******************999766656788*********************************99555578999************ PP DUF573 95 iW 96 iW Dca28876.1 204 IW 205 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.3E-32	106	205	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MADDHHHRNN HPLSPTAATA DDDDLDEDDV VSTQSDSDDD VDDPCNASDD DVVLPPSTSP 60 SPASATAASS AAVTVAVTPP PPPPAAAAIA APVLDRKPID DSRRLFQRLW TDEDEIELLR 120 GFLEYTSARG GATAAGHHHD TAAFYDQIKN KLQLEFNKNQ LVEKLRRLKK KYRNVLSKMN 180 SGNGKEFVFK SPHDQATFEI SSKIWCNLST NYRGGGGGGG VGGGGAGVGA GAIVVADFDD 240 DDQNPNPNPN YNPLPMSAAT PPRPPNSSYV ISHINLNSAS SGGSSGGGGF DMSSMNSSGF 300 GSGALSKLST RKKPRIVKTE SGTIHNNNNN NNNASINNNN SNNNINNVNN IGLSTPLQGF 360 VEETVRSCLS PVLKDLINSA TAGANVENSG FKGVGVLSLN AVPLNYSGVK VREDAVMDEK 420 WRKQQILELE VYSRRLELVQ DQIKLSLEEL RSMES

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MADDHHHRNN HPLSPTAATA DDDDLDEDDV VSTQSDSDDD VDDPCNASDD DVVLPPSTSP  60
SPASATAASS AAVTVAVTPP PPPPAAAAIA APVLDRKPID DSRRLFQRLW TDEDEIELLR  120
GFLEYTSARG GATAAGHHHD TAAFYDQIKN KLQLEFNKNQ LVEKLRRLKK KYRNVLSKMN  180
SGNGKEFVFK SPHDQATFEI SSKIWCNLST NYRGGGGGGG VGGGGAGVGA GAIVVADFDD  240
DDQNPNPNPN YNPLPMSAAT PPRPPNSSYV ISHINLNSAS SGGSSGGGGF DMSSMNSSGF  300
GSGALSKLST RKKPRIVKTE SGTIHNNNNN NNNASINNNN SNNNINNVNN IGLSTPLQGF  360
VEETVRSCLS PVLKDLINSA TAGANVENSG FKGVGVLSLN AVPLNYSGVK VREDAVMDEK  420
WRKQQILELE VYSRRLELVQ DQIKLSLEEL RSMES

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010674885.1	1e-130	PREDICTED: probable transcription factor At3g04930 isoform X1
Refseq	XP_021773098.1	1e-130	probable transcription factor At5g28040
TrEMBL	A0A0K9S386	1e-118	A0A0K9S386_SPIOL; Uncharacterized protein
STRING	XP_010674885.1	1e-130	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	2e-44	DNA-binding storekeeper protein-related transcriptional regulator