PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca27883.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 250aa    MW: 29440.8 Da    PI: 8.8728
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca27883.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.66.7e-192168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd llv++v+++G g+W+++ar  g++R +k+c++rw +yl
       Dca27883.1 21 KGPWTSEEDRLLVEYVRLHGEGRWNSVARLTGLKRNGKSCRLRWVNYL 68
                     79******************************9*************97 PP
2Myb_DNA-binding50.74.1e-1674118147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T++E+  ++++++++G++ W+tIar ++ gRt++++k++w+++
       Dca27883.1  74 RGQITPQEESVILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 118
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.8221672IPR017930Myb domain
SuperFamilySSF466893.8E-3018115IPR009057Homeodomain-like
SMARTSM007174.0E-162070IPR001005SANT/Myb domain
PfamPF002495.2E-172168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-232275IPR009057Homeodomain-like
CDDcd001671.74E-112368No hitNo description
PROSITE profilePS5129419.87573123IPR017930Myb domain
SMARTSM007174.3E-1473121IPR001005SANT/Myb domain
PfamPF002497.5E-1474118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2476123IPR009057Homeodomain-like
CDDcd001671.61E-978119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MMAANMGIMG WGMMESEGWR KGPWTSEEDR LLVEYVRLHG EGRWNSVARL TGLKRNGKSC  60
RLRWVNYLRP DLKRGQITPQ EESVILELHA RWGNRWSTIA RSLPGRTDNE IKNYWRTHFK  120
KKVKAPSNDQ SERSKSRLLR KQQFFQQQQQ QHHYYLQFQE QQQQPQPQPQ QQFTTIDMKK  180
IISLLLDDGE TTKVTGEVAN NYPSYPTTAS STTDEQGVNY PMFNYSDTST SEGSNNDELL  240
WDHFWNVEDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-282112327128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021807006.12e-93myb-related protein 305-like
TrEMBLV7BE967e-92V7BE96_PHAVU; Uncharacterized protein
STRINGXP_007144143.11e-92(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.15e-76myb domain protein 305