PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca27529.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ARR-B
Protein Properties Length: 648aa    MW: 70893.6 Da    PI: 6.6824
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca27529.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.47.7e-29211264155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Dca27529.1 211 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 264
                 79*******************.********************************8 PP
2Response_reg73.86.7e-25361441109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ + +l+++l+  +y +v+ +  +e al ll+e++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a ++++ + + +  Ga 
    Dca27529.1  36 VLVVDDDPTCLIILEKMLRTCRY-DVTKTNRAEFALSLLRENKngFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKSVVMKGVTHGAC 130
                   89*********************.***************999999**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +e+l +
    Dca27529.1 131 DYLIKPVRIEALKN 144
                   **********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.2E-17011639IPR017053Response regulator B-type, plant
SuperFamilySSF521725.55E-3433156IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.0E-4133169No hitNo description
SMARTSM004481.8E-2734146IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.95435150IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.6E-2236144IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.42E-2537149No hitNo description
PROSITE profilePS5129411.048208267IPR017930Myb domain
SuperFamilySSF466893.4E-20208268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-30210269IPR009057Homeodomain-like
TIGRFAMsTIGR015579.1E-25211264IPR006447Myb domain, plants
PfamPF002499.2E-8213263IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MNLGGGLMGS MSLPSSTMTR KPVDGGSDPF PAGLRVLVVD DDPTCLIILE KMLRTCRYDV  60
TKTNRAEFAL SLLRENKNGF DIVISDVHMP DMDGFKLLEH VGLEMDLPVI MMSADDSKSV  120
VMKGVTHGAC DYLIKPVRIE ALKNIWQHVV RKKKNEWRDV EQSSSYDEGD RQQKQDDVVS  180
SPANEGSWKS SKRKAEDDDA DEKDDTSTLK KPRVVWSVEL HQQFVAAVNQ LGIDKAVPKK  240
ILELMNVPGL TRENVASHLQ KYRLYLRRLS GVSQHQGSGL NGSFMSQDGG FGAMSQLSGI  300
DLQALHATAQ LSSQTLAAYT RLPPIKPSMS MPFADQRNLF SFENTATSRY VDGQQQQQQY  360
SKQLNLLHGI PTTLESKQLA GLNQSAQVAG LNQSPQIAGL NQSAQISKNV NLQGSASSSH  420
HTSSLLMPVV PQHSRGQVLN ENVTGHVSRT QPSNRGYNRV SQAGRLVDYS INQIPDLPGT  480
TSFPLGSTPG LTSLASKGVF NQEDDSHDIK AMRGYVGSYD VFPEAHKAQD WQVRNPNMVY  540
GVSGPSSKLP TSVQSSINVT PGNPMFSSGL DNHHLGMTNI SHNGNGILVD STPRVKAEKI  600
SDVVSPGTNL FTEHYTQDDL MSALFKQHDG IGSGEYDFDG YSLDNIPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-22210270464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670915.10.0PREDICTED: two-component response regulator ARR2 isoform X2
SwissprotQ9ZWJ91e-177ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A0K9RPY90.0A0A0K9RPY9_SPIOL; Two-component response regulator
STRINGXP_010670914.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.21e-171response regulator 1
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]