PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca27100.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 322aa MW: 36160.9 Da PI: 7.7571

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca27100.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	95.7	7.3e-30	2	86	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewy +s rd+ky+tg r+nrat+sgyWkatgkd++v + +g l+g+kktLvfy+grap+g+kt+Wvmheyrl Dca27100.1 2 GEKEWYLYSLRDRKYPTGLRTNRATSSGYWKATGKDRQVNAGsgtgdglsspGGMLIGMKKTLVFYQGRAPRGVKTRWVMHEYRL 86 578***********************************9766665555555555*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.185	1	110	IPR003441	NAC domain
SuperFamily	SSF101941	7.06E-36	2	111	IPR003441	NAC domain
Pfam	PF02365	1.6E-13	6	86	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MGEKEWYLYS LRDRKYPTGL RTNRATSSGY WKATGKDRQV NAGSGTGDGL SSPGGMLIGM 60 KKTLVFYQGR APRGVKTRWV MHEYRLDGHF SSFRLSSNKE EWVICRIFHK NGGEKKTTFH 120 PPPLPPLSPF LRHLPPLLDI PTTTTITTTA TSSTSTIQSL EFCNRKPRNN NNNNNNNNNN 180 HYHSDSNFLL QSLLSNPLPN FSSLTDDPTT EFATSSAFPT TTATATSIGH HTPPPPFLFN 240 PLSSRASKQN KSMQQQLMYN HNAFGFSETD NQCHDNENED DNDNDDDVAV NFHMSSSSAD 300 ALDRLIYPSH HMNFAAESWP CH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-29	1	116	68	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-29	1	116	68	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-29	1	116	68	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-29	1	116	68	171	NO APICAL MERISTEM PROTEIN
4dul_A	3e-29	1	116	68	171	NAC domain-containing protein 19
4dul_B	3e-29	1	116	68	171	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021717717.1	6e-65	protein CUP-SHAPED COTYLEDON 1-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	8e-47	NAC family protein