PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca26661.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 251aa MW: 29077.4 Da PI: 5.0985 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.2 | 1.4e-18 | 41 | 94 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t eq++ Le+ Fe ++++ +++ eLAkk+gL+ rqV +WFqNrRa++k Dca26661.1 41 KKRRLTIEQVQFLERSFETENKLEPDRKMELAKKIGLQPRQVAIWFQNRRARYK 94 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 126.6 | 1.1e-40 | 40 | 131 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqv++LE+sFe+e+kLep+rK+ela+++glqprqva+WFqnrRAR+ktkqlEk+y +Lk++yd+lk + ++L+ke ++L++e++ Dca26661.1 40 EKKRRLTIEQVQFLERSFETENKLEPDRKMELAKKIGLQPRQVAIWFQNRRARYKTKQLEKEYGSLKANYDQLKLDFDSLSKERDNLQNEVE 131 69**************************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.04E-19 | 32 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.572 | 36 | 96 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.0E-18 | 39 | 100 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.3E-16 | 41 | 94 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.54E-16 | 41 | 97 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-20 | 43 | 103 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.1E-6 | 67 | 76 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 71 | 94 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.1E-6 | 76 | 92 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.8E-15 | 96 | 137 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MVNFDQDCHQ GRKSATKRDH IDIGLDSNID DFELNSYQSE KKRRLTIEQV QFLERSFETE 60 NKLEPDRKME LAKKIGLQPR QVAIWFQNRR ARYKTKQLEK EYGSLKANYD QLKLDFDSLS 120 KERDNLQNEV EVLTEKLKQR GDKTTTIFHM STVTPKMEIV KNDKTTAFAV LGNTNNNKQL 180 FVEDASSAKS DVFDSESPHC TDGNHSSLMD DPADQQSDFS PSLTPVYNNF LKVEDIGGFD 240 PNEQPFWSML Y |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 96 | RRARYKTKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010683269.1 | 2e-77 | PREDICTED: homeobox-leucine zipper protein HAT5 isoform X1 | ||||
Refseq | XP_010683271.1 | 2e-77 | PREDICTED: homeobox-leucine zipper protein HAT5 isoform X2 | ||||
TrEMBL | A0A068TVH7 | 7e-60 | A0A068TVH7_COFCA; Uncharacterized protein | ||||
STRING | XP_010683269.1 | 9e-77 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-42 | homeobox 1 |