PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca2590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | C3H | ||||||||
Protein Properties | Length: 232aa MW: 26800.8 Da PI: 9.2767 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.2 | 1.4e-08 | 28 | 48 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +Cr+f tG+C yGd CkFaH Dca2590.1 28 ICRNFWSTGHCVYGDACKFAH 48 69999999************* PP | |||||||
2 | zf-CCCH | 28.5 | 2.6e-09 | 130 | 155 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC++++ tC+yGd+C++aHg+ Dca2590.1 130 KTRLCSNWRGDDTCPYGDKCTYAHGR 155 8********999************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.22E-7 | 24 | 51 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.1E-4 | 25 | 50 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-8 | 27 | 49 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.056 | 28 | 51 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.3E-6 | 28 | 48 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.27 | 70 | 96 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.282 | 70 | 97 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-5 | 72 | 98 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-14 | 125 | 159 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-9 | 127 | 159 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.779 | 128 | 156 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.002 | 128 | 155 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-6 | 130 | 155 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MDTPHYNPNS VHRRTSNTRE NFLHNDQICR NFWSTGHCVY GDACKFAHKL RNDRSQYVNS 60 GLKSTNDSNK PQRTVCYYFS RGGNCPYDRC IFPHQISEEK RDVARESASI SIPTVEARHV 120 VVARNNHQVK TRLCSNWRGD DTCPYGDKCT YAHGRAELRR GTWTSEHRNL RATSKTTKTN 180 DLVSNSAEHP VQKSPLKPKV CPFKWNNRKL VGIYADWINE DSLDIDSPEK QQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 1e-13 | C3H family protein |