PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca25592.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | G2-like | ||||||||
Protein Properties | Length: 93aa MW: 10198.8 Da PI: 10.2732 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.7 | 4e-31 | 42 | 92 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kprlrWtp+LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQ Dca25592.1 42 KPRLRWTPDLHQRFVDAVSKLGGPDKATPKSVLKLMGMKGLTLYHLKSHLQ 92 79************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.642 | 39 | 93 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-29 | 39 | 92 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.33E-14 | 42 | 92 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-22 | 42 | 93 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-9 | 44 | 92 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MESGLGGVYG GSQGGSGVGY PYQFHHQHQL MEGGIIMSRD PKPRLRWTPD LHQRFVDAVS 60 KLGGPDKATP KSVLKLMGMK GLTLYHLKSH LQV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-20 | 42 | 92 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-20 | 42 | 92 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-20 | 42 | 92 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-20 | 42 | 92 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-20 | 42 | 92 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-20 | 42 | 92 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-20 | 42 | 92 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-20 | 42 | 92 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-20 | 42 | 92 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-20 | 42 | 92 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-20 | 42 | 92 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-20 | 42 | 92 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021725593.1 | 7e-38 | myb family transcription factor PHL11-like | ||||
Refseq | XP_021862386.1 | 5e-38 | myb family transcription factor PHL11 | ||||
Swissprot | C0SVS4 | 2e-32 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A2I4H7R8 | 4e-33 | A0A2I4H7R8_JUGRE; myb family transcription factor PHL11 | ||||
STRING | XP_010677471.1 | 7e-34 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 1e-32 | G2-like family protein |
Publications ? help Back to Top | |||
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