PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca25187.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 322aa    MW: 35977.8 Da    PI: 5.0586
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca25187.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.3e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd +++ +v  +G+g+W+ ++++ g++R++k+c++rw +yl
       Dca25187.1 14 RGLWTPEEDAKILAYVSSHGTGNWTQVPKKAGLNRCGKSCRLRWTNYL 61
                     788*******************************************97 PP
2Myb_DNA-binding47.93e-1569110346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +T+ E+el++++++  G++ W++Ia+ ++ gRt++++k++w++
       Dca25187.1  69 EFTEKEEELIIQYHAAIGSR-WSLIAKQLP-GRTDNDVKNYWNT 110
                      69******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-26564IPR009057Homeodomain-like
PROSITE profilePS5129427.156965IPR017930Myb domain
SuperFamilySSF466891.54E-3011108IPR009057Homeodomain-like
SMARTSM007174.4E-151363IPR001005SANT/Myb domain
PfamPF002491.1E-161461IPR001005SANT/Myb domain
CDDcd001674.33E-121761No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129418.76866116IPR017930Myb domain
SMARTSM007172.0E-1466114IPR001005SANT/Myb domain
PfamPF002495.5E-1469110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRPPCCDKA NVKRGLWTPE EDAKILAYVS SHGTGNWTQV PKKAGLNRCG KSCRLRWTNY  60
LRPDLKHEEF TEKEEELIIQ YHAAIGSRWS LIAKQLPGRT DNDVKNYWNT KLKKKLSKLG  120
IDPITHKPYT KIFSDFRSIS CLTTINQPTF LENKSSVTDL SSIQSGIQNL NIGGIHLNNQ  180
FPSVYSYGDN CSLQQESFSH YMDELSPTSS SSSSSSSSSI SNSQSGSCLL SFTQPLQTTD  240
VNEEEHNIQG FLATDLPTQN QENNDQFAPT ILNIDTATGE TETTEASNHY EPSSVSSFVK  300
TLLDSDSEMQ SSFPVFEDIL DY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866687.11e-122transcription factor MYB35
TrEMBLA0A0K9R4931e-121A0A0K9R493_SPIOL; Uncharacterized protein
STRINGXP_010670356.11e-115(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.13e-72MYB family protein