PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca24535.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 505aa    MW: 57036.6 Da    PI: 6.786
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca24535.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27.2e-1917107199
                 EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 ffkv+       s +l++p kfa++  +++   +k+  led++g++W+ kl  ++ +g+ v++ GW++F +++g++ gDfvvF++++rs f  vv++f 
  Dca24535.1  17 FFKVMFG--KQFSEQLIVPPKFARTLnSLV---GKKTYLEDTTGQKWDAKL--SRVKGSLVIQCGWQDFSQDHGIELGDFVVFHHVRRSHF--VVQIFT 106
                 5566622..2334569*******9995333...5689**************..99999****************************99999..***997 PP

                 S CS
          B3  99 k 99 
                 +
  Dca24535.1 107 R 107
                 6 PP
2B332.81.3e-104404953289
                 --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
          B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                 ++k ++l+d+ g++W +k   + k g+ +l+kGWkeF k ++++ g  ++F l+++++
  Dca24535.1 440 NQKLIVLRDSAGNKWPMKS--EEKEGKKILAKGWKEFGKYHKVQPGNKCTFVLENSQQ 495
                 4578***************..9**99**************************976433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-2314110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.02915108IPR003340B3 DNA binding domain
CDDcd100171.72E-1916105No hitNo description
Gene3DG3DSA:2.40.330.105.1E-2216110IPR015300DNA-binding pseudobarrel domain
PfamPF023622.9E-1617107IPR003340B3 DNA binding domain
SMARTSM010191.9E-1217108IPR003340B3 DNA binding domain
SMARTSM010190.87395501IPR003340B3 DNA binding domain
SuperFamilySSF1019361.51E-10433500IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-8433504No hitNo description
Gene3DG3DSA:2.40.330.104.6E-11438502IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-8440493IPR003340B3 DNA binding domain
PROSITE profilePS5086310.532444505IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MSLHRAKLDP NPIVCSFFKV MFGKQFSEQL IVPPKFARTL NSLVGKKTYL EDTTGQKWDA  60
KLSRVKGSLV IQCGWQDFSQ DHGIELGDFV VFHHVRRSHF VVQIFTRSGC ERPALFSDKN  120
YQNKRVKATR DYVSDSHKVA GFDSDCNQRE DNASKSLVIA EDLPIEGSTL KRHKVAPADE  180
FILEPYEMTG GNTSLIRADD RDHLYDLSIF EKPLKEVVVT NEPDNREYLF DLSVFETPAK  240
KEHTDEASIA VNHKFTQGFN ESENAQIVID SVDVEERQIA ETNPPLASND TCLSREEPNL  300
LLKSSLDVDK PSDSDTLQGF ARLIASRFPA AQPKLQPPGP IARTVKKEPQ PCQNVNDYWV  360
AYSSRNAPRD VLKDPATHNK GLCNLGDKRA INQDFLGKIL KPESVDFINS TPTDMTRFTC  420
SVVEQDGEPV LELPQRLPIN QKLIVLRDSA GNKWPMKSEE KEGKKILAKG WKEFGKYHKV  480
QPGNKCTFVL ENSQQCIFKV EVLPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.16e-09B3 family protein