PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca24335.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 141aa    MW: 15936.1 Da    PI: 4.658
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca24335.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.22.3e-1640119588
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                 ++  ++ + g l +p+kf++    +  +s   ++ ++ +rsWe+k+  ++++++   l+ GWk Fv++n L++gD+++F+l++ +
  Dca24335.1  40 TMGRSHVSIGYLPIPRKFFRVLPRS--TS-ASVILSRGSRSWEMKY--QGYPSSlRKLGHGWKTFVEDNTLNVGDVCIFELMSCE 119
                 5556666778899******766544..33.345678899*******..8888877789**********************98633 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-2033130IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-2033129IPR015300DNA-binding pseudobarrel domain
CDDcd100179.89E-1635130No hitNo description
PROSITE profilePS5086313.28136133IPR003340B3 DNA binding domain
PfamPF023623.4E-1436119IPR003340B3 DNA binding domain
SMARTSM010197.4E-936128IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MDPELLPETV SMKICVDDDD DDDDDDDVEP LSGKPFFHMT MGRSHVSIGY LPIPRKFFRV  60
LPRSTSASVI LSRGSRSWEM KYQGYPSSLR KLGHGWKTFV EDNTLNVGDV CIFELMSCEA  120
ALIKFKVQVL GGDLPSEFTR Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858973.13e-32uncharacterized protein LOC110798132
RefseqXP_021867250.12e-33B3 domain-containing protein Os04g0386900-like
TrEMBLA0A0K9QEU51e-33A0A0K9QEU5_SPIOL; Uncharacterized protein
STRINGXP_010694213.15e-31(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-11B3 family protein