PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca24327.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

DBB

Protein Properties

Length: 314aa MW: 34270.3 Da PI: 6.5698

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca24327.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.1	3.7e-08	4	46	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 C+ +++ke++ fC+ ++ lC+ C H+ H+v+ Dca24327.1 4 QCDVCSQKEASVFCTADEAALCDVCDHRVHHAnklaskhHRVS 46 7****************************64559999966554 PP
2	zf-B_box	27.9	5e-09	56	95	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ ++ek++ fC++++ lC++C + H H Dca24327.1 56 PLCDICQEKRALVFCQEDRAILCRECDISLHTAkelvqkH 95 78***************************99545555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.907	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	6.72E-7	3	47	No hit	No description
SMART	SM00336	4.2E-6	4	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.9E-6	4	46	IPR000315	B-box-type zinc finger
SMART	SM00336	7.5E-13	53	100	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.296	53	100	IPR000315	B-box-type zinc finger
CDD	cd00021	1.19E-10	56	100	No hit	No description
Pfam	PF00643	5.5E-7	56	96	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009641	Biological Process	shade avoidance
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MKIQCDVCSQ KEASVFCTAD EAALCDVCDH RVHHANKLAS KHHRVSLLQP SSSHVPLCDI 60 CQEKRALVFC QEDRAILCRE CDISLHTAKE LVQKHNRFLL TGIKFSTTVC DPTVSKISSD 120 HSVSINDRSD TTVPDFKAMK SPTSISFATN STSNSSAVNS GASTTTSNIS DYLIETLPGW 180 HFDDFVLDPT TITPVAPFGF SKGGVGVGVG NNSDFGMDED LSAFFDVEEY EKNFTRQSQN 240 ILWVPQAATG TGAAIDHETC SSVYKSGLVN GTKQQATSVN NATKTDRKLS RNEGFTVPQI 300 ISSVAQNKRS RSFW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021758361.1	1e-102	B-box zinc finger protein 20-like
TrEMBL	A0A2I7ZAP5	2e-93	A0A2I7ZAP5_SESPO; Salt tolerance protein
STRING	XP_010672311.1	1e-100	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	2e-65	salt tolerance homolog2