PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca23859.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 406aa    MW: 44690.1 Da    PI: 9.445
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca23859.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-17218267255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+WvA Ir p++   r+r++lg+f+tae+Aa a++ a+  l+g
  Dca23859.1 218 LYRGVRQRH-WGKWVADIRLPRN---RTRVWLGTFDTAEDAAFAYDTAAYMLRG 267
                 59******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.25E-30217277No hitNo description
SMARTSM003802.4E-32218281IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-22218276IPR016177DNA-binding domain
PROSITE profilePS5103222.26218275IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-31218277IPR001471AP2/ERF domain
PfamPF008476.4E-11219267IPR001471AP2/ERF domain
PRINTSPR003677.9E-11219230IPR001471AP2/ERF domain
PRINTSPR003677.9E-11241257IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDDHNTEMQN FMQKKFPPNF SDFGDANLWV VDFHNDVSRV KSAASLVSPE TDFCSDFSKN  60
YSNSSVELDV NFDLTAPRTS TFVNFLKCSL PDQLTQHLSG RNLSLFSIDA KTTNSSIEKT  120
TGSSVRRSAR DAVAADFIPL YGHSQYQHGQ EWLRMNENFC SNYSPKALGT KTQPMKYSSR  180
KLQTLLHPMT TSLSSPSLSS PSSSSSSSSS SSLSSGKLYR GVRQRHWGKW VADIRLPRNR  240
TRVWLGTFDT AEDAAFAYDT AAYMLRGDYA HLNFPDQKHL LQSLAITTFR YPLLAASLIP  300
INTASASASS TSVKPLLRSA TAHSIPSFIP WQTTPNPIPQ PSLTLASQVT LHQSPSGPTP  360
SCRSSFRLQL RFVPLAATTG PSCISINSYD NSSTLRTTSL DLAGIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21214275163ATERF1
3gcc_A3e-21214275163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0J8CM812e-52A0A0J8CM81_BETVU; Uncharacterized protein
STRINGXP_010673427.13e-53(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.14e-28ERF family protein