PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca22914.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 756aa    MW: 84207.8 Da    PI: 9.0553
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca22914.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.5e-07495544147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
       Dca22914.1 495 RRPFSVSEVEALVHAVEKLGTGRWRDVKLCSFesaKHRTYVDLKDKWKTL 544
                      678999********************9999999**************986 PP
2Myb_DNA-binding22.13.5e-07659708147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
       Dca22914.1 659 RRPFSVSEVEALVHAVEKLGTGRWRDVKLCSFesaKHRTYVDLKDKWKTL 708
                      678999********************9999999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.12E-9297394IPR029071Ubiquitin-related domain
PROSITE profilePS500539.526303376IPR000626Ubiquitin domain
CDDcd017693.54E-5307373No hitNo description
PROSITE profilePS5129413.737490549IPR017930Myb domain
SMARTSM007174.2E-7494547IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-9495545IPR009057Homeodomain-like
SuperFamilySSF466893.35E-15496578IPR009057Homeodomain-like
CDDcd116601.35E-15496546No hitNo description
PROSITE profilePS5129413.737654713IPR017930Myb domain
SMARTSM007174.2E-7658711IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-9659709IPR009057Homeodomain-like
CDDcd116601.35E-15660710No hitNo description
SuperFamilySSF466891.33E-14660740IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MVAGKLLEES KCSSASSSAN VGFDKHDVGK GGVKEEPRDV DKSLGGENDD HGSSEGSVYF  60
SGIEKGKAAS DGTTPLVSSV MSEKLDSDCK SNIIRDFPFV GESDDTNVGN ELNRKLDING  120
DVSRNVTVAN KSAAPSDSRD VPELPFLGEF DTKDSFLDCV NDVKIGCKDD GEIFSRFCQP  180
DNVSKIFRSP TRVGDRRFRK PHMYKYWKTA PKLKDCEVTN SGGAAKYDCH SRRPHYEIDR  240
SQRNTPFKKR KLFDRSSVGT YNGGISCESA SNSPEKSRDD DGNRKLPSGF RRQNSCNSRN  300
SHVSLSIKSF KVPELFVEVP ESTTVGSLKR TVLEAVTSIF GGGLRVGVLL HGKKIRDDNR  360
TLLQTGISQN DDINTVGFML EPNSPTQPSS PNSPKEPPKP LLCNSPKVVN RSQVKPEDDT  420
FGLGPLDKLS VTDSNSPAGS SRELVPVTTT VEFPEKNVTD SKALVLVPEP KMEALDLLPM  480
NQRSKRFEIG HRRTRRPFSV SEVEALVHAV EKLGTGRWRD VKLCSFESAK HRTYVDLKDK  540
WKTLVHTARI SPQQRRGEPV PQELLDRVLA AQAYWSQIKP EDDTFGLGPL DKPSVTDSNS  600
PARSSRELVP VTTTVEFPEK NVTDSKALVL VPEPKMEALD LLPMNQRSKR FEIGHRRTRR  660
PFSVSEVEAL VHAVEKLGTG RWRDVKLCSF ESAKHRTYVD LKDKWKTLVH TARISPQQRR  720
GEPVPQELLD RVLAAQAYWS EHQPKQHSKQ HHSIIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-514797471113Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194200DRRFRKP
2241250QRNTPFKKRK
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690776.10.0PREDICTED: telomere repeat-binding protein 3
SwissprotQ6R0E31e-113TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A0K9RZZ30.0A0A0K9RZZ3_SPIOL; Uncharacterized protein
STRINGXP_010690776.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.19e-97TRF-like 2