PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca2233.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

EIL

Protein Properties

Length: 485aa MW: 54231.1 Da PI: 6.3549

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca2233.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	414.5	1.2e-126	1	321	60	353
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-T CS EIN3 60 MlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppq 159 Mlk+mevc+aqGfvYgiipekgkpv+gasd+Lr+WWkekv+fdrngpaai+ky+a+nli+ +++ ++ +s+ h l+elqDTtlgSLLsalmqhcdppq Dca2233.1 1 MLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKEKVRFDRNGPAAIAKYEADNLIFMNSNAGDS-IRSSAHALQELQDTTLGSLLSALMQHCDPPQ 99 9**********************************************************9999977.999************************ PP TS--TTT--HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S-- CS EIN3 160 rrfplekgvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecat 259 rrfplekg++pPWWP+G+e+ww elgl++d g+ppykkphdlkkawkvsvLtavikhmsp+i++ir+l+rqsk+lqdkm+ake++++l ++n+ee ++++ Dca2233.1 100 RRFPLEKGLPPPWWPMGNEEWWVELGLPNDYGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKETATWLTIINHEEGIARQ 199 ************************************************************************************************ PP XXXX.XX..XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX.........................XXXXXXXXXXXXXXXXXXXXX......XX CS EIN3 260 vsah.ss..slrkqspkvtlsceqkedvegkkeskikhvqavktta.........................gfpvvrkrkkkpsesakvsskevsrtcqs 331 +++h + +++p++ +s++ ++dv+g+ e+ i + q++k ++ + +++rkrk+ s+++ ++++ ++tc Dca2233.1 200 LYPHlCPllIGGSGEPSYAISDSGDYDVDGTVEEPIVEPQEQKGASsevnnetqpvilqmpnqikgemmfsDGDFTRKRKAAASSEQVINEQFPIYTCGF 299 7444433459***********8888888888888887788899999****************************************** PP XXXXX.XXXXXXXXXXXXXXXX CS EIN3 332 sqfrgsetelifadknsisqne 353 s + +++ ++f+d+ s+++++ Dca2233.1 300 SGCLHQQRGFGFSDRVSRDNHQ 321 ******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	3.5E-109	1	194	No hit	No description
Gene3D	G3DSA:1.10.3180.10	1.3E-73	69	204	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamily	SSF116768	9.15E-61	73	197	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MLKMMEVCKA QGFVYGIIPE KGKPVTGASD NLREWWKEKV RFDRNGPAAI AKYEADNLIF 60 MNSNAGDSIR SSAHALQELQ DTTLGSLLSA LMQHCDPPQR RFPLEKGLPP PWWPMGNEEW 120 WVELGLPNDY GPPPYKKPHD LKKAWKVSVL TAVIKHMSPD IAKIRKLVRQ SKCLQDKMTA 180 KETATWLTII NHEEGIARQL YPHLCPLLIG GSGEPSYAIS DSGDYDVDGT VEEPIVEPQE 240 QKGASSEVNN ETQPVILQMP NQIKGEMMFS DGDFTRKRKA AASSEQVINE QFPIYTCGFS 300 GCLHQQRGFG FSDRVSRDNH QLICRFRNNC LQFGNIQANT NQVKAGNNFQ HSYLGSEVGN 360 PGNNSALPLI NLQGVGIPDA GQKMIGELMS MYDVNNNSGS VNQNVVQQIG FRQNDQIQFQ 420 GRGLTQNSFG PTAIQMNQNG FNRSNRFEHN MQENALNSTL PSPFDLPFID FMDDVQAGTS 480 SAWYR

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MLKMMEVCKA QGFVYGIIPE KGKPVTGASD NLREWWKEKV RFDRNGPAAI AKYEADNLIF  60
MNSNAGDSIR SSAHALQELQ DTTLGSLLSA LMQHCDPPQR RFPLEKGLPP PWWPMGNEEW  120
WVELGLPNDY GPPPYKKPHD LKKAWKVSVL TAVIKHMSPD IAKIRKLVRQ SKCLQDKMTA  180
KETATWLTII NHEEGIARQL YPHLCPLLIG GSGEPSYAIS DSGDYDVDGT VEEPIVEPQE  240
QKGASSEVNN ETQPVILQMP NQIKGEMMFS DGDFTRKRKA AASSEQVINE QFPIYTCGFS  300
GCLHQQRGFG FSDRVSRDNH QLICRFRNNC LQFGNIQANT NQVKAGNNFQ HSYLGSEVGN  360
PGNNSALPLI NLQGVGIPDA GQKMIGELMS MYDVNNNSGS VNQNVVQQIG FRQNDQIQFQ  420
GRGLTQNSFG PTAIQMNQNG FNRSNRFEHN MQENALNSTL PSPFDLPFID FMDDVQAGTS  480
SAWYR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4zds_A	6e-78	71	202	1	132	Protein ETHYLENE INSENSITIVE 3
4zds_B	6e-78	71	202	1	132	Protein ETHYLENE INSENSITIVE 3
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269\|PubMed:9215635, ECO:0000269\|PubMed:9851977}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010689360.1	1e-177	PREDICTED: ETHYLENE INSENSITIVE 3-like 1 protein
Swissprot	Q9SLH0	1e-154	EIL1_ARATH; ETHYLENE INSENSITIVE 3-like 1 protein
TrEMBL	Q5QCN1	0.0	Q5QCN1_DIACA; Ethylene insensitive 3-like 3
STRING	XP_010689360.1	1e-176	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27050.1	1e-152	ETHYLENE-INSENSITIVE3-like 1

Publications ? help Back to Top
Iordachescu M,Verlinden S Transcriptional regulation of three EIN3-like genes of carnation (Dianthus caryophyllus L. cv. Improved White Sim) during flower development and upon wounding, pollination, and ethylene exposure. J. Exp. Bot., 2005. 56(418): p. 2011-8 [PMID:15983019] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kim HG, et al. GDSL LIPASE1 modulates plant immunity through feedback regulation of ethylene signaling. Plant Physiol., 2013. 163(4): p. 1776-91 [PMID:24170202] Zhang GB,Yi HY,Gong JM The Arabidopsis ethylene/jasmonic acid-NRT signaling module coordinates nitrate reallocation and the trade-off between growth and environmental adaptation. Plant Cell, 2014. 26(10): p. 3984-98 [PMID:25326291] Wang J, et al. Arabidopsis ROOT HAIR DEFECTIVE3 is involved in nitrogen starvation-induced anthocyanin accumulation. J Integr Plant Biol, 2015. 57(8): p. 708-21 [PMID:25494721] Qing D, et al. Quantitative and Functional Phosphoproteomic Analysis Reveals that Ethylene Regulates Water Transport via the C-Terminal Phosphorylation of Aquaporin PIP2;1 in Arabidopsis. Mol Plant, 2016. 9(1): p. 158-174 [PMID:26476206] Poulios S,Vlachonasios KE Synergistic action of histone acetyltransferase GCN5 and receptor CLAVATA1 negatively affects ethylene responses in Arabidopsis thaliana. J. Exp. Bot., 2016. 67(3): p. 905-18 [PMID:26596766] Shen X,Li Y,Pan Y,Zhong S Activation of HLS1 by Mechanical Stress via Ethylene-Stabilized EIN3 Is Crucial for Seedling Soil Emergence. Front Plant Sci, 2016. 7: p. 1571 [PMID:27822221] Abozeid A, et al. Ethylene Improves Root System Development under Cadmium Stress by Modulating Superoxide Anion Concentration in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 253 [PMID:28286514] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944] Harkey AF, et al. Identification of Transcriptional and Receptor Networks That Control Root Responses to Ethylene. Plant Physiol., 2018. 176(3): p. 2095-2118 [PMID:29259106]