PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca22326.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | YABBY | ||||||||
Protein Properties | Length: 147aa MW: 16394.2 Da PI: 7.6034 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 28.2 | 5.8e-09 | 1 | 38 | 31 | 69 |
YABBY 31 lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslke 69 +++ vtvrCGhC++llsvn +s l+ + +++ ++ Dca22326.1 1 MYNSVTVRCGHCANLLSVNFGPSSPFLPPDFQ-EHTSED 38 6899****************999987776554.444444 PP | |||||||
2 | YABBY | 133 | 3.9e-41 | 44 | 121 | 92 | 170 |
YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ts s++++++ ++ pr+pp irPPekrqrvPsayn+fikeeiqrika+nP+ishreafsaaaknWahfP+i fgl Dca22326.1 44 SNTSGGSSSITTELNDPQPRMPP-IRPPEKRQRVPSAYNKFIKEEIQRIKACNPEISHREAFSAAAKNWAHFPHIQFGL 121 34444455677888888999999.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.9E-48 | 1 | 121 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 7.46E-8 | 66 | 115 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.8E-4 | 69 | 115 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MYNSVTVRCG HCANLLSVNF GPSSPFLPPD FQEHTSEDNV SLDSNTSGGS SSITTELNDP 60 QPRMPPIRPP EKRQRVPSAY NKFIKEEIQR IKACNPEISH REAFSAAAKN WAHFPHIQFG 120 LNFDAQRQAR VDQTIAGEGS NRSHGLY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010685467.1 | 4e-68 | PREDICTED: putative axial regulator YABBY 2 isoform X2 | ||||
Swissprot | Q9XFB0 | 4e-55 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A0K9Q8J8 | 7e-60 | A0A0K9Q8J8_SPIOL; Uncharacterized protein (Fragment) | ||||
STRING | XP_010685466.1 | 2e-65 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 2e-42 | YABBY family protein |
Publications ? help Back to Top | |||
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