PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca21730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | YABBY | ||||||||
Protein Properties | Length: 134aa MW: 15168.8 Da PI: 10.5835 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 136.2 | 4e-42 | 21 | 113 | 78 | 170 |
YABBY 78 eeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++ + ++++ a ++++ + + e+p++p + rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl Dca21730.1 21 NNQAPNYSFSQTNVAASYTTPASNRGGPNVELPKPPSTTRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 113 22222222233333333332222245567899**999******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.3E-39 | 23 | 113 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.44E-8 | 55 | 107 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 6.9E-5 | 61 | 105 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MTHHNHNLFS SNPHTHMGEM NNQAPNYSFS QTNVAASYTT PASNRGGPNV ELPKPPSTTR 60 PPEKRQRVPS AYNRFIKDEI QRIKAGNPDI SHREAFSAAA KNWAHFPHIH FGLMADQAVK 120 RTSNMRPHHP QDEK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021855930.1 | 3e-64 | axial regulator YABBY 5-like | ||||
Swissprot | A2X7Q3 | 1e-39 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 1e-39 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | A0A0K9QY62 | 7e-63 | A0A0K9QY62_SPIOL; Uncharacterized protein | ||||
STRING | XP_010676177.1 | 4e-60 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 4e-40 | YABBY family protein |
Publications ? help Back to Top | |||
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