PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca21114.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 263aa    MW: 28301.7 Da    PI: 9.7598
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca21114.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-194190255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +++GVr ++ +gr++AeIrdp++   + r++lg+f+taeeAa+a++ a+++++g
  Dca21114.1 41 HFRGVRKRP-WGRYAAEIRDPTK---KSRVWLGTFDTAEEAARAYDDAARAFRG 90
                69*******.**********864...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.07E-224098No hitNo description
Gene3DG3DSA:3.30.730.102.4E-324199IPR001471AP2/ERF domain
SMARTSM003801.7E-3741104IPR001471AP2/ERF domain
PROSITE profilePS5103223.4994198IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-224199IPR016177DNA-binding domain
PfamPF008477.1E-134190IPR001471AP2/ERF domain
PRINTSPR003675.7E-114253IPR001471AP2/ERF domain
PRINTSPR003675.7E-116480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MAPKVVGGGG NAGTAAMLRL KLGAGCGAGA GLGNVISKEA HFRGVRKRPW GRYAAEIRDP  60
TKKSRVWLGT FDTAEEAARA YDDAARAFRG AKAKTNFPLL NDVPNYSNKI VINNNNKINN  120
NNNNQSCSPS QSSTVESSSQ GRTSPAITPM KMIDSQPLDL NLSAGVRFPF PSPPTVFPAN  180
QHLYNHHHQQ FYYFDALARQ QQYQMAAAQQ MIFHHAPAPA GCGGALSDSD SSSVVDLNQD  240
LNVVSRPRGV EIDLNKPPPS DLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-213799164ATERF1
3gcc_A2e-213799164ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-25erf domain protein 9