PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca20780.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family Nin-like
Protein Properties Length: 622aa    MW: 66612.1 Da    PI: 8.6593
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca20780.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK51.61.9e-16379423448
      RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 
                 ++s+ed+sk F lp+ +AA  Lgv + vLK+ C ++G++RWPhRk
  Dca20780.1 379 TLSFEDVSKLFPLPLSEAADILGVTTGVLKKLCNENGLERWPHRK 423
                 79******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF017169.9E-9496324IPR002628Photosystem II PsbO, manganese-stabilising
SuperFamilySSF569252.2E-9497324IPR011250Outer membrane protein/outer membrane enzyme PagP, beta-barrel
Gene3DG3DSA:2.40.160.305.4E-78121237No hitNo description
Gene3DG3DSA:3.30.2050.101.1E-20238272No hitNo description
Gene3DG3DSA:2.40.160.305.4E-78280326No hitNo description
PROSITE profilePS5151914.402361446IPR003035RWP-RK domain
PfamPF020423.7E-14379423IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010205Biological Processphotoinhibition
GO:0010207Biological Processphotosystem II assembly
GO:0035304Biological Processregulation of protein dephosphorylation
GO:0042549Biological Processphotosystem II stabilization
GO:0009535Cellular Componentchloroplast thylakoid membrane
GO:0009543Cellular Componentchloroplast thylakoid lumen
GO:0009654Cellular Componentphotosystem II oxygen evolving complex
GO:0010287Cellular Componentplastoglobule
GO:0016021Cellular Componentintegral component of membrane
GO:0019898Cellular Componentextrinsic component of membrane
GO:0005509Molecular Functioncalcium ion binding
GO:0008266Molecular Functionpoly(U) RNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MAASLQASTT FLQPTKVSSR NSVHLRSSPN VCKAFGVEQG GGRVSLSLQS NVKDLAKKCV  60
DATKLAGFAL ATSALIASGA NAEGAPKRLT FDEIQSKTYM EVKGTGTANQ CPTLAGGLDS  120
FAFKPGKYQA KKFCLEPTKF TVKAEGVSKN SPPDFQDTKL MTRLTYTLDE IEGPFEVSPD  180
GTVKFEEKDG IDYAAVTVQL TGGERVPFLF TVKQLVASGK AESFSGEFLV PSYRGSSFLD  240
PKGRGGSTGY DNAVALPAGG RGDEEELQKE NVKNTASSKG TITLSVTKSN PETGEVIGVF  300
HSLQPSDTDL GAKTPKDVKI EGVWDLQLCT SLALMIIRKL VSEACNVDGL YFVLTLQFVV  360
TGDGIMSAVQ NQKQNLDHTL SFEDVSKLFP LPLSEAADIL GVTTGVLKKL CNENGLERWP  420
HRKYLAGKSI EEIKNEAAKE KNKASGGNSQ GDRNKSNMST SAVASSSPSP GSLVKDKTAK  480
SASDNPQQSG SKITWRPYQV VAAGLALEAS TFSQEFKYGF PSSGLSWSTN KWWGGCGVNN  540
TLTTGEATKT LDVKDASESQ VESNIKEQSG KDAKDNFPLS SIRKRALEEG QKALKNGALK  600
KHGADQLEKE EKILLRRLFQ AS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3jcu_o0.013281329Oxygen-evolving enhancer protein 1, chloroplastic
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStabilizes the manganese cluster which is the primary site of water splitting (By similarity). Binds GTP after preillumination of photosystem II core complex. This binding is inhibited by DCMU. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673597.10.0PREDICTED: oxygen-evolving enhancer protein 1, chloroplastic
SwissprotP123590.0PSBO_SPIOL; Oxygen-evolving enhancer protein 1, chloroplastic
TrEMBLB5BT060.0B5BT06_SALEU; 33 kDa protein of the oxygen-evolving complex
STRINGXP_010673597.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74480.18e-09RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Spetea C, et al.
    Multiple evidence for nucleotide metabolism in the chloroplast thylakoid lumen.
    Proc. Natl. Acad. Sci. U.S.A., 2004. 101(5): p. 1409-14
    [PMID:14736920]