PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca20695.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family M-type_MADS
Protein Properties Length: 248aa    MW: 27584.4 Da    PI: 8.1952
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca20695.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.26.7e-111139129
                S---SHHHHHHHHHHHHHHHHHHHHHHHH CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSv 29
                k++e k  r vtf+kRr+g++KK +EL+ 
  Dca20695.1 11 KKVEKKESRDVTFTKRRQGLFKKCYELCS 39
                5689999********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.89363IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-10362IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-14463IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-9525IPR002100Transcription factor, MADS-box
PfamPF003198.2E-141257IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-92540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSKGKQKTEI KKVEKKESRD VTFTKRRQGL FKKCYELCST YNSEFAAIAF SIARKPFFSG  60
YPSAERDKFS RDRSWRPDIC LGIVSVASLS DRSSDSSFLR FPIEDDIALD KALFDKLTNT  120
SVTISPVELV DVSGILARIK QSQTETAEHR FLLEGSVLFA VAIREPTISG MKGVGSTTLD  180
STPWNLFNVL DSTTDLLCDI RGMLKALQKN TQNWLNLAAV NTENTDGGEC NSSNIWLNAT  240
TSISILNL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-11AGAMOUS-like 61