PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca20289.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 378aa    MW: 40632 Da    PI: 6.7954
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca20289.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.5e-10221269355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Dca20289.1 221 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 269
                 58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.87E-11216273No hitNo description
SuperFamilySSF474594.19E-17216287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485218268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-16219286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-7221269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10224274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGDNGSGQMG YQQQHGVGGG GGENSRSGLM IPAGWDPVLS VGQSSDFGAS SMVTEAQGGI  60
SSTSHLVNNY SHLVDPNLAQ LLPQLNMFGS GNIHELVGSA GGCGRGGLHK STTTYNSQGE  120
RGCQISEGIS VGVSPNGKRK RGSEPSSPIT KAGEGHLQKD PSSETLGSRE RDEKWQKSEQ  180
NATDNSPNKQ TGKQVKDDSQ CEDASKQNYI HVRARRGQAT NSHSLAERVR REKISERMRL  240
LQELVPGCNK ITGKAVMLDE IINYVQSLQQ QVEFLSMKLA TVNPELNFNI EQLLSKDILQ  300
SRGSGPPILG FDQGMSSTHN FSQGIHQSMT SMPNSASQYH HMSQAVWDGD LQSLLQMGFD  360
PNTPINGLGP NGNSKTEL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687581.11e-152PREDICTED: transcription factor bHLH74
RefseqXP_010687589.11e-152PREDICTED: transcription factor bHLH74
TrEMBLA0A0K9S0141e-142A0A0K9S014_SPIOL; Uncharacterized protein
STRINGXP_010687581.11e-152(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.13e-76bHLH family protein