PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca19681.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 396aa    MW: 43411.7 Da    PI: 8.4585
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca19681.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.77.2e-122751226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                +++ C+f++rtG C++G++C+F+H+
  Dca19681.1 27 GEPDCSFYLRTGLCRFGSTCRFNHP 51
                6899********************8 PP
2zf-CCCH31.23.7e-105776827
                GGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  8 ffartGtCkyGdrCkFaHgp 27
                ++++tGtCk+G++CkF+H++
  Dca19681.1 57 YYLKTGTCKFGATCKFHHPK 76
                8*****************96 PP
3zf-CCCH37.24.9e-1298122327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C +++rtG+Ck+G++CkF+H++
  Dca19681.1  98 ESECAYYLRTGQCKFGSTCKFHHPQ 122
                 679********************97 PP
4zf-CCCH36.39.7e-12255281127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C+++++tG Ck+G+ C+F+H++
  Dca19681.1 255 PGQPECQYYLKTGDCKFGAVCRFHHPR 281
                 5789*********************96 PP
5zf-CCCH40.35.3e-13301327127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++lC f++r+G+Ck+G++CkF H++
  Dca19681.1 301 PGEPLCIFYSRYGICKFGPNCKFDHPM 327
                 589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.8E-62552IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6242553IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-92751IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-53053IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-43150IPR000571Zinc finger, CCCH-type
SMARTSM003560.0265376IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-85776IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.4745777IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-45775IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.03795123IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-495122IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-1098122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-698123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4101121IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5254281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624254282IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-8256281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5259284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-5260282IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7300327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84300328IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10302327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-6303327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4305325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MWPINIRSNE AVDAGLYPSG PYPEREGEPD CSFYLRTGLC RFGSTCRFNH PSNRKLYYLK  60
TGTCKFGATC KFHHPKDKAG IAGRVPVNVL GYPLRPSESE CAYYLRTGQC KFGSTCKFHH  120
PQPSASLRSS SVYPPVQSPT TPGHQQSYPG GGLASWPLSR ASIIPSPRWQ GPSTYAPLII  180
PQGMVSVPGW NAYMGQMGSV SGTEGQQQTS GNSTLYGNVR QNDPPTQGAY STYRSGSIPM  240
GYYALQRDSV FPDRPGQPEC QYYLKTGDCK FGAVCRFHHP RERLIPAPDC HLSPLGLPLR  300
PGEPLCIFYS RYGICKFGPN CKFDHPMGIF AYNMSPTSTD ASAMRRYLGS SSASGGLTLT  360
PEGVVEQSSG HNRRISLSET RDDISSGEDH NDENEG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021734383.10.0zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A0K9QBJ80.0A0A0K9QBJ8_SPIOL; Uncharacterized protein
STRINGXP_010673925.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-136zinc finger protein 1