PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca19089.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 308aa    MW: 34915.7 Da    PI: 7.385
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca19089.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.2e-144287146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEd+ l++ v+++G+++W++I ++  + Rt+k+c++rw +
       Dca19089.1 42 KGPWKPEEDQVLINHVNKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 87
                     79*************************8887799**********87 PP
2Myb_DNA-binding44.14.8e-1498137344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      ++T+eE+   +++  qlG++ W+tIa ++  gRt++++k++w
       Dca19089.1  98 KFTAEEERVVIELQSQLGNK-WATIATHLS-GRTDNDVKNFW 137
                      79******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.0513793IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-204090IPR009057Homeodomain-like
SMARTSM007175.2E-114191IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-2841137IPR009057Homeodomain-like
PfamPF002493.2E-124287IPR001005SANT/Myb domain
CDDcd001672.67E-114489No hitNo description
Gene3DG3DSA:1.10.10.601.3E-1691143IPR009057Homeodomain-like
PROSITE profilePS5129417.29594145IPR017930Myb domain
SMARTSM007171.3E-1095143IPR001005SANT/Myb domain
CDDcd001673.82E-998137No hitNo description
PfamPF002492.9E-1198137IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEESSYSISG NNFNYCHGNS SKNSNKSTDS SSKNEGLIIL RKGPWKPEED QVLINHVNKY  60
GPRDWSSIRS KGLLQRTGKS CRLRWVNKLR PNLKIGCKFT AEEERVVIEL QSQLGNKWAT  120
IATHLSGRTD NDVKNFWSSR QKRLARILRS QSQSPQPPHH KRLKSSSSST SANSSRNRSL  180
FVEVPKTSFV DVDAAFITNT TEPTSNDTTT INNRGPTHFS TDDPVQIHES LQLEEASFPS  240
LLRLPHETQE LIDRLDTSFL QTFDDPLFSD IGIHSGSDHN HVTLDSFFDD FPADMFDQIE  300
PLPSPSRW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-284014325126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as a positive regulator of male germline development by promoting both gametic cell specification and cell cycle progression (PubMed:15694308, PubMed:15618418, PubMed:19300502, PubMed:21285328). Binds to canonical MYB sites 5'-AACCGTC-3', 5'-AAACCGC-3' and 5'-AACCGT-3' in promoters to trigger the expression of male germline-specific or enriched genes (e.g. MGH3, GEX2 and GCS1), including those required for fertilization (PubMed:21285328, PubMed:19300502). Required for sperm cell specification leading to pollen maturation by activating a germline-specific regulon (PubMed:21285328, PubMed:15694308, PubMed:15618418, PubMed:19300502). Involved in pollen mitosis entry at G2-M transition via the regulation of CYCB1-1, DAZ1 and DAZ2 expression (PubMed:15618418, PubMed:19300502, PubMed:24876252). {ECO:0000269|PubMed:15618418, ECO:0000269|PubMed:15694308, ECO:0000269|PubMed:19300502, ECO:0000269|PubMed:21285328, ECO:0000269|PubMed:24876252}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA 159 (miR159); the production of miR159 is stimulated by the anaphase promoting complex/cyclosome (APC/C) (PubMed:21441434). Activated by ARID1 in male germline cells via specific histone acetylation regulation (e.g. H3K9Ac) (PubMed:25057814). {ECO:0000269|PubMed:21441434, ECO:0000269|PubMed:25057814}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019107688.13e-95PREDICTED: transcription factor MYB21
SwissprotA0A178VEK71e-73DUO1_ARATH; Transcription factor DUO1
TrEMBLA0A061DVG46e-78A0A061DVG4_THECC; Myb-like HTH transcriptional regulator family protein, putative
TrEMBLA0A1R3K0V26e-78A0A1R3K0V2_9ROSI; Uncharacterized protein
STRINGXP_010692444.12e-91(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-65MYB family protein
Publications ? help Back to Top
  1. Zheng B,He H,Zheng Y,Wu W,McCormick S
    An ARID domain-containing protein within nuclear bodies is required for sperm cell formation in Arabidopsis thaliana.
    PLoS Genet., 2014. 10(7): p. e1004421
    [PMID:25057814]
  2. Peters B, et al.
    A Conserved cis-Regulatory Module Determines Germline Fate through Activation of the Transcription Factor DUO1 Promoter.
    Plant Physiol., 2017. 173(1): p. 280-293
    [PMID:27624837]
  3. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]