PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca18980.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

ERF

Protein Properties

Length: 278aa MW: 31655.8 Da PI: 9.1205

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca18980.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	26.4	1.8e-08	4	30	28	54
AP2 28 rkrfslgkfgtaeeAakaaiaarkkle 54 +kr++lg+f ta+eAaka+++a ++ Dca18980.1 4 KKRIWLGTFETAKEAAKAYDKASIIMN 30 4********************977665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	12.655	1	39	IPR001471	AP2/ERF domain
SMART	SM00380	3.2E-5	1	45	IPR001471	AP2/ERF domain
Pfam	PF00847	1.5E-4	2	27	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.31E-10	3	40	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.8E-15	3	40	IPR001471	AP2/ERF domain
CDD	cd00018	1.02E-14	4	41	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MCRKKRIWLG TFETAKEAAK AYDKASIIMN GRNAKTNFST SQDLNDEITN NNNNININVW 60 HTKLRKSNVS PSLTCLKLDN ESNHIGVWQT GAGTKSDSKW VMTVNLHKCK QGVGDDKTLA 120 QHEHEHEHEE DKLKGCFYGR KFEVVDGNIT YSEGALILKF GIWGRSYKYA DVVAMGKTLM 180 DDKPFEIWYS KFGRDFNNGG MRLRCEKDMP EFMNSRDKYD YIELYIVELK NSPPLFGLGT 240 GKRSGPRCKN PSLVAHHSSN IFSSQVIDSS QQPLVQSR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15360.1	2e-30	ERF family protein