PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca18667.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 319aa    MW: 36061.1 Da    PI: 9.8476
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca18667.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.3e-182267147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ 
       Dca18667.1 22 RGHWRPAEDEKLRKLVEQFGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 67
                     899*****************************.***********996 PP
2Myb_DNA-binding57.23.7e-1874117146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++++eE+e+l+ a++ +G++ W++I+r ++ gRt++ +k++w+ 
       Dca18667.1  74 RKPFSEEEEERLLTAHRIHGNK-WALISRLFP-GRTDNAVKNHWHV 117
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.9981772IPR017930Myb domain
SuperFamilySSF466892.66E-2920115IPR009057Homeodomain-like
SMARTSM007171.4E-142170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-272375IPR009057Homeodomain-like
PfamPF139212.6E-172585No hitNo description
CDDcd001679.53E-142566No hitNo description
SMARTSM007179.3E-1673121IPR001005SANT/Myb domain
PROSITE profilePS5129420.27873123IPR017930Myb domain
CDDcd001673.79E-1276116No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2076121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEDSCGNNSS DNEMKSSSSC PRGHWRPAED EKLRKLVEQF GPQNWNSIAE KLQGRSGKSC  60
RLRWFNQLDP RINRKPFSEE EEERLLTAHR IHGNKWALIS RLFPGRTDNA VKNHWHVIMA  120
RMQRERSRQG YPHGKSPRHI IPHNNSSISL PINPLNNGIF KSNYPTNGAR SWNNIIPSSN  180
NFDKFRAPSS IGNDSMAINP KLLANRCFYK DGTRELLPSS SSNVSSLING HGGFSANLVN  240
YYGYDHNTKG NLPSNCYPIH NQNRLSTTKA MTTGSSPFKF DRIEVRQEDE QEGDDGGAMV  300
VNNSKEVRFI DFLGVGISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-30221214103C-Myb DNA-Binding Domain
1msf_C5e-30221214103C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00145DAPTransfer from AT1G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010692619.11e-89PREDICTED: transcription factor LAF1
TrEMBLA0A0J8E9A43e-88A0A0J8E9A4_BETVU; Uncharacterized protein
STRINGXP_010692619.15e-89(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.16e-66myb domain protein 52