PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca1834.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NAC
Protein Properties Length: 718aa    MW: 80404.5 Da    PI: 4.7871
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca1834.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.64.1e-52101371127
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                lp GfrF+Ptd el+++yL+ kv+g++ ++  +ikevdi++vePwdLp  +++k+ ++ew+fF++rd+ky++g+r+nrat +gyWkatgkd++++skk  
  Dca1834.1  10 LPLGFRFKPTDVELINHYLRLKVNGRHDDV-ACIKEVDICRVEPWDLPdlSAIKTYDHEWFFFCPRDRKYPNGQRSNRATGAGYWKATGKDRTIKSKKMG 108
                699************************999.88**************96448888999****************************************** PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyr 127
                l+g+kktLvfy+grapkg++t+Wv+heyr
  Dca1834.1 109 LIGMKKTLVFYTGRAPKGQRTNWVIHEYR 137
                ****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-575161IPR003441NAC domain
PROSITE profilePS5100555.06610161IPR003441NAC domain
PfamPF023654.4E-2611137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MGALSMFENL PLGFRFKPTD VELINHYLRL KVNGRHDDVA CIKEVDICRV EPWDLPDLSA  60
IKTYDHEWFF FCPRDRKYPN GQRSNRATGA GYWKATGKDR TIKSKKMGLI GMKKTLVFYT  120
GRAPKGQRTN WVIHEYRPTL QELDGTNPGQ EAFVICRLFK KTDDLKQDDN DDGSNIDEVE  180
TNVLSPNQTN ISQEDARSEP AVVQASPGFV EKTVEQQKLP KSRKVKTSDS ITSEATKPTV  240
PYQSHSFSYD NMHHGSEVHE EITHEVDSCL NEQMVFGAPY ETDEPLNPPM IFYNDYPPKP  300
QTLQQMHGNQ DIAGLKSSFI PDNGDVGTEF QFPNNYGRDH ISDFLDSVII DQDFPDYLGY  360
GNRGPSLTER DVREDVDMMS WKKASVNESG SCSGSDVEVS QLQYDIGPFG GVASNCGVPK  420
FIEQPVLNNS YTDDDNVFSD ANVDRFCNLS DEEDKFISGN NFVKAGYGIN NAEAKIQIRS  480
SNSQRTLPPT NFVDQGTAPR RVRLVSDFKS PACKIEENES ESTVTEGWLP TGSVDPLEDL  540
ISLAELSDSP PPADDGDSVM NDGQAVDSGI KIRTRLREII PAADDDRESC VKDGRVVETG  600
IKIRTRPQKV QPKTNSYVNH GTATRRIRLQ KQIVESFNAE DDSDKSVVAE VRKLSEEVGQ  660
STCITDDSDQ KLSLPKRSTS VTHKGLGWRA VLYVVTVAFL SMSCIGLWKT IYPVLFWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-43916714174Stress-induced transcription factor NAC1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.24e-85NAC transcription factor-like 9