PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca16250.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 295aa    MW: 32700.4 Da    PI: 5.0637
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca16250.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49e-151758346
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +++++E+el++++++  G++ W+ Ia+ ++ gRt++++k++w++
       Dca16250.1 17 SFSEQEEELIIKLHAAVGSR-WAIIAHQLP-GRTDNDIKNHWNT 58
                     69******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.724164IPR017930Myb domain
SuperFamilySSF466894.61E-14366IPR009057Homeodomain-like
SMARTSM007176.4E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-191761IPR009057Homeodomain-like
CDDcd001676.51E-111760No hitNo description
PfamPF002491.4E-131758IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MKKCGKSCKV KWSNNESFSE QEEELIIKLH AAVGSRWAII AHQLPGRTDN DIKNHWNTKL  60
RKKLSERGID PVTHKPFSQI LADYGKIGGL SRAASTVGGS CHIGTIKRDL KKVASFALPK  120
PELSSSSSTF LTYENISTIT TTTMTTTNDS SNNSLDLLSQ LQAITLVTER ANPENNYNNS  180
PLSEFTKAYD NEGKAESFSW NEFLLDDTTT KVAKDQEQEF DDDIGCVTAS SKPRHMTETG  240
NGLINGYYPF QVVDLKSTST SMSSTSQASS FLEAMLDQED DMFLNFPGLM EDSLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-1436437105MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-1436437105C-Myb DNA-Binding Domain
1msf_C3e-1436437105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021734079.11e-87transcription factor MYB35-like
STRINGXP_010678637.14e-77(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.14e-28myb domain protein 103