PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca16051.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | B3 | ||||||||
Protein Properties | Length: 203aa MW: 22989.8 Da PI: 9.7302 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.8 | 6.8e-12 | 3 | 77 | 17 | 97 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++p f+++++g + ++l+d++gr+W kl s + +t+GW++ ++ +Lk+g+fvv++++++s+f +v+++ Dca16051.1 3 RIPHAFIKNFDGR--IPNLVSLTDSTGRVWPAKL--GLLSHELHITEGWQQCTEDLELKSGEFVVLRYVQNSTF--LVTAC 77 69*****888766..6678***************..88888899*************************99999..88776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.758 | 1 | 80 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.9E-13 | 3 | 84 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.7E-9 | 3 | 77 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.45E-7 | 3 | 77 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-12 | 3 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.77E-6 | 99 | 189 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.9E-4 | 102 | 184 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MKRIPHAFIK NFDGRIPNLV SLTDSTGRVW PAKLGLLSHE LHITEGWQQC TEDLELKSGE 60 FVVLRYVQNS TFLVTACGID GCQKKEYGVG HPTNLTTPDL KIRFKKVFSG DFKNFVTIPK 120 KVLLKCIFSL DQRVTVRSIE GHFTTSQLRI TSDKFVLGYT GLLKLWERMG VLKGDKLQFE 180 VICENGNKIK EIVVTNLSQC GRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 7e-10 | B3 family protein |