PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca16035.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NF-YA
Protein Properties Length: 304aa    MW: 33739.2 Da    PI: 9.3111
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca16035.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.54.5e-33162218158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 dep+YVNaKQy++Il+RRq+Rakle+++kl +k+rkpylheSRh+hAl+R Rg+gGrF
  Dca16035.1 162 DEPIYVNAKQYHGILRRRQSRAKLEAQNKL-IKARKPYLHESRHRHALNRVRGTGGRF 218
                 79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-37160221IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.253161221IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-27163218IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.7E-24164186IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860166186IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.7E-24195218IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MYSNHPQWWN SNDHQISESL SKRLSLKMDS PPGLGLNNSM PLGFQLHDHD SSSSQSTQSN  60
NHDLTATTTT AGVNSQDQCM SSESGHEVNG GFNLGRMKPV YMTGHPDTVC NNGHIDYNRT  120
MTCVPHPCGD PYFNGILTGY GSVPIMGITN ARLPLPLDIS EDEPIYVNAK QYHGILRRRQ  180
SRAKLEAQNK LIKARKPYLH ESRHRHALNR VRGTGGRFLS TKKAQESNSN MSHDNHSNSN  240
SYPFGHNNVN STGFESHQNL VNSGNAFYQQ TDGNFLGISS GGSMQGNRSR FMNNPSQQRA  300
PVVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-22162223263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021750058.11e-130nuclear transcription factor Y subunit A-7-like isoform X1
TrEMBLA0A0K9RF321e-119A0A0K9RF32_SPIOL; Uncharacterized protein
STRINGXP_010666451.11e-112(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.12e-40nuclear factor Y, subunit A5