PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca14913.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | NF-YA | ||||||||
Protein Properties | Length: 133aa MW: 15242.1 Da PI: 10.6899 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 95.9 | 4.4e-30 | 26 | 83 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRaklee.ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQy++Il+RRq+Rakl+ + k+ + s+ pylheSRh+hAl+R Rg+gGrF Dca14913.1 26 DEPIYVNAKQYHGILRRRQSRAKLDClRLKT-SSSKLPYLHESRHRHALNRVRGTGGRF 83 79***********************945555.89999*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.1E-30 | 24 | 86 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.571 | 25 | 86 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.9E-25 | 27 | 83 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.1E-23 | 28 | 50 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.1E-23 | 60 | 83 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MMYRIQTQIM GITNARLPLP LDISEDEPIY VNAKQYHGIL RRRQSRAKLD CLRLKTSSSK 60 LPYLHESRHR HALNRVRGTG GRFLSTKKAQ ESNSNMSHDN HSNSNSYPFG HNNVNSTGFE 120 SHQNLVKSGN AFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 7e-20 | 26 | 88 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021715040.1 | 3e-42 | nuclear transcription factor Y subunit A-7-like | ||||
Refseq | XP_021715041.1 | 3e-42 | nuclear transcription factor Y subunit A-7-like | ||||
Swissprot | Q9LVJ7 | 5e-31 | NFYA6_ARATH; Nuclear transcription factor Y subunit A-6 | ||||
TrEMBL | A0A0J8DZ11 | 2e-40 | A0A0J8DZ11_BETVU; Uncharacterized protein | ||||
STRING | XP_010666451.1 | 7e-40 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 7e-31 | nuclear factor Y, subunit A5 |
Publications ? help Back to Top | |||
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