PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca13450.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 358aa MW: 40763 Da PI: 6.2348

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca13450.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	153	203	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h ++Er+RR+ +N+ ++ Lr+l+P++ + ++ + a+i A++++k++ Dca13450.1 153 QRMTHIAVERNRRRLMNDHLNALRSLMPPS---YVQRGDQASIIGGAIDFVKDM 203 79**************************...9***************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.19E-16	151	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.06E-11	151	208	No hit	No description
PROSITE profile	PS50888	14.894	152	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-12	153	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-10	153	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-9	158	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MEKLQGAVNP CLVGEDLDAS WLDEFVSNYA FEDPYNNTED LLANSDDKMP FMQMLQGVES 60 AGLASVPIIQ EPNYFQLLLK LQHQKMEHPQ HYYCSNFAST TEVECTVKSE TCVEEHEHAA 120 EFAKTMSNVA PKERRKRKRA SRAMKNKEEA ESQRMTHIAV ERNRRRLMND HLNALRSLMP 180 PSYVQRGDQA SIIGGAIDFV KDMEQLLQSL EGQKRMKQCH EDDNNTVIIS STTSTTSSSN 240 LMNNNDPIED VGRRNNKNNN NSEELSVEKR GEVGDIKVVV IQSHVNLKIE CQRRPGQLMR 300 AILGFEQLRL TILHLNITSL HTLVHYSFNL KIEDDCKLGT TDEVLKAVHH VFGLTNVH

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MEKLQGAVNP CLVGEDLDAS WLDEFVSNYA FEDPYNNTED LLANSDDKMP FMQMLQGVES  60
AGLASVPIIQ EPNYFQLLLK LQHQKMEHPQ HYYCSNFAST TEVECTVKSE TCVEEHEHAA  120
EFAKTMSNVA PKERRKRKRA SRAMKNKEEA ESQRMTHIAV ERNRRRLMND HLNALRSLMP  180
PSYVQRGDQA SIIGGAIDFV KDMEQLLQSL EGQKRMKQCH EDDNNTVIIS STTSTTSSSN  240
LMNNNDPIED VGRRNNKNNN NSEELSVEKR GEVGDIKVVV IQSHVNLKIE CQRRPGQLMR  300
AILGFEQLRL TILHLNITSL HTLVHYSFNL KIEDDCKLGT TDEVLKAVHH VFGLTNVH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	138	RRKRKR
2	153	164	RMTHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021767228.1	1e-119	transcription factor bHLH57-like isoform X1
TrEMBL	A0A0K9RJ71	1e-111	A0A0K9RJ71_SPIOL; Uncharacterized protein
STRING	XP_010688515.1	2e-93	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	4e-61	bHLH family protein