PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca13191.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family Trihelix
Protein Properties Length: 305aa    MW: 35644.9 Da    PI: 7.695
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca13191.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix781.4e-2451133186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W+ qe+++ + +r e+++++ ++k++k lWe +s+kmr+ gf rs++qCk+kw+nl +ryk ++++e +     ++++p++++++
  Dca13191.1  51 QWSVQETKEFLGIRAELDKTFMETKRNKLLWEVISSKMRDLGFLRSAEQCKCKWKNLVTRYKGCETMEPEA---MRQNFPFYNEMQ 133
                 7********************************************************************95...56689******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819951.88E-5439No hitNo description
CDDcd122031.22E-2350115No hitNo description
PfamPF138375.9E-1951135No hitNo description
PROSITE profilePS500906.9852108IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEGHQHPQQH QHHHQYQQQQ QQQQLQQPPP PQQMSGAGVA VEGGGGDRFP QWSVQETKEF  60
LGIRAELDKT FMETKRNKLL WEVISSKMRD LGFLRSAEQC KCKWKNLVTR YKGCETMEPE  120
AMRQNFPFYN EMQSIFTARM QRMLWAETEG GGPGPSSSSK KSKPHGPNMS SDDEDEDDSD  180
GDHKGPKKSK AKKPKIGFGG TSTSSSVSHS SINSINAIKE MLEKFMKQQV EMEVQWREAY  240
EAREEERRLT ENEWRQRMEA LENERLLMER RWREREEQRR LREDARADQR DALINALLLK  300
LQRDP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264622.11e-104PREDICTED: trihelix transcription factor GT-3b-like isoform X2
RefseqXP_019054174.11e-104PREDICTED: trihelix transcription factor GT-3b-like isoform X1
SwissprotO804502e-76TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A2Z7B1Q61e-105A0A2Z7B1Q6_9LAMI; Trihelix transcription factor GT-3b
STRINGXP_010264622.11e-103(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.11e-54Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]