PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca12836.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

G2-like

Protein Properties

Length: 533aa MW: 58102.1 Da PI: 7.3622

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca12836.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.3	1.5e-32	306	360	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Dca12836.1 306 RQRLRWTEDLHNRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 360 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd06174	3.31E-11	1	253	IPR020846	Major facilitator superfamily domain
SuperFamily	SSF103473	1.44E-14	2	255	IPR020846	Major facilitator superfamily domain
Gene3D	G3DSA:1.20.1250.20	1.4E-7	79	253	No hit	No description
PROSITE profile	PS51294	11.722	303	363	IPR017930	Myb domain
SuperFamily	SSF46689	7.7E-17	306	360	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.5E-31	306	361	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.7E-25	307	361	IPR006447	Myb domain, plants
Pfam	PF00249	8.8E-8	308	359	IPR001005	SANT/Myb domain
Pfam	PF14379	3.0E-22	394	439	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence Send to blast
MFGLSKTYWM ALTSRFLLGA LCGVLGPIRI SSAWGIGLVV GPALGGYLSQ ETLHSHDAIE 60 DNANFVSKDV EKSKGIEDES SNSWVSLMKN WPLMSVVIMF SVFQMHDMAF NEIFSLWAVS 120 PRSLGGLGFL TSDVGNALAV TGISVLLCQS FLYPVVERAL GPMTIARGAT VLSIILLTSF 180 PFIGNLTGTT LKVVIDLASA IQNVLAVTVL TGMFLLQNRA VCQAQRGTAN GISLCIVSFA 240 NAIGPAAAGS ILSWAQSRQK SSFLPDMYHD TNFSTVSLAP HNTQASEQAG NHGAAGSPTP 300 PGAGGRQRLR WTEDLHNRFV DAITQLGGPD RATPKGVLRV MGVPGLTIYH VKSHLQKYRL 360 AKYLPESPSD GSKDEKKGSG DGLADTDPSS QGLEISDALR MQMEVQKRLQ EQLEVQRQLQ 420 MRIEAQGKYL QKIIEEQQKL DSSLRASDAR PSLKRDDPTN KPSESQSGAE RSPANSSPTR 480 KKQKLDDSTK GIIDPLSLVD PILDPPETDH RQTFENQWDE HLYRNKEVEN RRS

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence Send to blast

MFGLSKTYWM ALTSRFLLGA LCGVLGPIRI SSAWGIGLVV GPALGGYLSQ ETLHSHDAIE  60
DNANFVSKDV EKSKGIEDES SNSWVSLMKN WPLMSVVIMF SVFQMHDMAF NEIFSLWAVS  120
PRSLGGLGFL TSDVGNALAV TGISVLLCQS FLYPVVERAL GPMTIARGAT VLSIILLTSF  180
PFIGNLTGTT LKVVIDLASA IQNVLAVTVL TGMFLLQNRA VCQAQRGTAN GISLCIVSFA  240
NAIGPAAAGS ILSWAQSRQK SSFLPDMYHD TNFSTVSLAP HNTQASEQAG NHGAAGSPTP  300
PGAGGRQRLR WTEDLHNRFV DAITQLGGPD RATPKGVLRV MGVPGLTIYH VKSHLQKYRL  360
AKYLPESPSD GSKDEKKGSG DGLADTDPSS QGLEISDALR MQMEVQKRLQ EQLEVQRQLQ  420
MRIEAQGKYL QKIIEEQQKL DSSLRASDAR PSLKRDDPTN KPSESQSGAE RSPANSSPTR  480
KKQKLDDSTK GIIDPLSLVD PILDPPETDH RQTFENQWDE HLYRNKEVEN RRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-23	305	363	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-23	305	363	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-23	305	363	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-23	305	363	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-23	305	363	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-23	305	363	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-23	305	363	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-23	305	363	1	59	Protein PHOSPHATE STARVATION RESPONSE 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	3e-48	G2-like family protein