PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca12352.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 353aa    MW: 39140.8 Da    PI: 4.4291
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca12352.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12e-102793191055
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Dca12352.1 279 RKRRERINERLRILQSLVPNG-----TKVDLSTMLEEAVQYVKFLQ 319
                 9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.377269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-14269333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-12274328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.54E-11278323No hitNo description
PfamPF000101.4E-7279319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MMEGGEWNAF DRVLSVNEEA DFMAKLFSNS SFTDDPEMSS LSLSSSFYSG HEPGMIVEGD  60
DNASFYTNDS DSNLYSLSQG SSSLSGSSES VAAYHQQCPE NYSVQNFNNN DSADQFFGVN  120
NGGVSLPVEF CLDTKGVVQV FPGNLIERNH SFSVEMSCDN LDESEFDLTR QMENSLDSRK  180
HEISDHVEPS VDDTKCSYPS ETGRKRSRKS EAKKGKSNTR SKRNKKNGID EDDNGLALNN  240
QNSGSCSSDE LSGENSNDPN VKTRASRGSA TDPQSLYARK RRERINERLR ILQSLVPNGT  300
KVDLSTMLEE AVQYVKFLQL QIKLLSSDDL WMYAPLAYNG MDIGLDAKLN SLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687357.11e-101PREDICTED: transcription factor bHLH84
TrEMBLA0A0K9RMZ12e-87A0A0K9RMZ1_SPIOL; Uncharacterized protein
STRINGXP_010687357.11e-100(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-43bHLH family protein