PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca12235.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 305aa MW: 34929.3 Da PI: 6.6787

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca12235.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.6	1.7e-55	16	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL +k ++++++ +i e+d++k+ePwdLpkk+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++ Dca12235.1 16 LPPGFRFHPTDEELITHYLSHKFLDSSFNA-IAIGEADLNKIEPWDLPKKAKWGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYR-EKTI 112 79***********************999.88***********99999*************************************.9999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLvfy+grapkgek++Wvmheyrl Dca12235.1 113 VGMKKTLVFYTGRAPKGEKSNWVMHEYRL 141 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.84E-62	9	166	IPR003441	NAC domain
PROSITE profile	PS51005	56.614	16	166	IPR003441	NAC domain
Pfam	PF02365	1.8E-29	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MENNSGMSME DEQMELPPGF RFHPTDEELI THYLSHKFLD SSFNAIAIGE ADLNKIEPWD 60 LPKKAKWGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYREK TIVGMKKTLV 120 FYTGRAPKGE KSNWVMHEYR LHGKFPNNYL PKNLKKEWVI SRVFEKNSNA KTPYDPRSIT 180 PKELHPSYLP PLMDSSPSYD SPEQTKVMCT TTNVDSCHAA RNPHIDEQYH YNSTITSHDM 240 ASSSSSLLYS MKSSIAELEF VDSILAQDQP LLSLLIEGKS SIKEEVGLNG SSGPNNNGFD 300 CLWSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-54	13	171	14	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-54	13	171	14	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-54	13	171	14	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-54	13	171	14	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-54	13	171	17	173	NAC domain-containing protein 19
3swm_B	1e-54	13	171	17	173	NAC domain-containing protein 19
3swm_C	1e-54	13	171	17	173	NAC domain-containing protein 19
3swm_D	1e-54	13	171	17	173	NAC domain-containing protein 19
3swp_A	1e-54	13	171	17	173	NAC domain-containing protein 19
3swp_B	1e-54	13	171	17	173	NAC domain-containing protein 19
3swp_C	1e-54	13	171	17	173	NAC domain-containing protein 19
3swp_D	1e-54	13	171	17	173	NAC domain-containing protein 19
4dul_A	1e-54	13	171	14	170	NAC domain-containing protein 19
4dul_B	1e-54	13	171	14	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021770843.1	1e-119	NAC domain-containing protein 92-like
Refseq	XP_021770844.1	1e-119	NAC domain-containing protein 92-like
Swissprot	Q9FLJ2	4e-97	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1U8A0S9	1e-107	A0A1U8A0S9_NELNU; NAC domain-containing protein 100-like
STRING	XP_010693263.1	1e-116	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	5e-98	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]