PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca11230.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ARR-B
Protein Properties Length: 553aa    MW: 61682.5 Da    PI: 6.5081
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca11230.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.51.2e-27305358155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k +++Wt+eLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR+
  Dca11230.1 305 KMKVDWTSELHKKFVQAVEQL-GVDQAIPSRILELMKVEGLTRHNVASHLQKYRM 358
                 5689*****************.********************************8 PP
2Response_reg33.32.6e-12211262109
                   EEE.SSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   2 liv.dDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   l+  +D+++ +e+  ++l+  +y +v+++ +  eal  +++k+  +++ ++ i+  + dG    + +++++ +lp i+++ ++  +++ +++ +Ga 
    Dca11230.1  21 LLLdEDKDSSAEIKSKLLQ-MEY-IVTTFFSEYEALSSVEKKTesFHVAIVEISAENTDGR--YRFLETAK-DLPTIMMSKENCLSTMMKCIALGAV 112
                   6662555555555555555.888.8**************999889***************5..45565655.9************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   +fl Kp ++++l++
    Dca11230.1 113 EFLIKPLSEDKLRN 126
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.9E-1616146No hitNo description
SuperFamilySSF521721.24E-1416134IPR011006CheY-like superfamily
SMARTSM004487.6E-418128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011021.82719132IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.0E-920127IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.90E-921131No hitNo description
PROSITE profilePS5129414.113302361IPR017930Myb domain
SuperFamilySSF466894.48E-18303361IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-27303361IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-25305358IPR006447Myb domain, plants
PfamPF002496.3E-8308357IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MVCTANDLLE WKDFPKGLRI LLLDEDKDSS AEIKSKLLQM EYIVTTFFSE YEALSSVEKK  60
TESFHVAIVE ISAENTDGRY RFLETAKDLP TIMMSKENCL STMMKCIALG AVEFLIKPLS  120
EDKLRNIWQH VVHKAFNTSG SENSESLKSV KDFVGSVLKL QHGPASDNPD NDTEMDDENN  180
DCAQSAAVVD KFPAPSTPQI KQGRSLDDGD YHDNQPNNSE TKFDDNTCDS SIAKMEVDVP  240
PQITSVGVIK VEEDCSTDGS KGSDKDVAPA SAAAAVADTR ECTDSVNKTS ATVKNSCRPK  300
SNKKKMKVDW TSELHKKFVQ AVEQLGVDQA IPSRILELMK VEGLTRHNVA SHLQKYRMSR  360
RHILPKEDER RWPQPRDSRN YYSHSHNHRP AMMAYAPYQT NHGFMPGQVY PVWGQQGGGR  420
PPGLPMWGPP PAYPPWQPVE SWHWKPYPGM HADAWGCPVM PPPHPCPSTS YPPVQPGYRF  480
PSPDSCGKHS ADTHIPGDEV IDKVVKEAIS KPWLPLPIGL KPPSTDSVLA ELSRQGISTV  540
PPHHINNYHH SRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-16303363363ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019105078.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-136APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A0K9RR190.0A0A0K9RR19_SPIOL; Uncharacterized protein
TrEMBLA0A0K9RSM00.0A0A0K9RSM0_SPIOL; Uncharacterized protein
STRINGXP_010677297.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-125ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]