PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca10730.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 241aa    MW: 27092.4 Da    PI: 6.4019
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca10730.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.23e-13171216655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  Dca10730.1 171 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKTLQ 216
                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.659165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-16168234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-12169220No hitNo description
Gene3DG3DSA:4.10.280.107.4E-17170236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-13171221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10171216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MQEDPPTELS RLGGLARFRS APTTWLDALL SDDHHTSSTF THLLSSSDPS PAPAHPPQPE  60
SYPKLEAHDP VFDDGFQRMN SSPADFLGAN IEGYFAGFGA PATTSYDDVS PVRKRFRESD  120
VDQLSPSFVG QRRGELKTAN SLVEMEMEKL LEDSVACRVR AKRGCATHPR SIAERVRRTR  180
ISDRIRKLQE LVPNMDKQTN TADMLEEAVE YVKTLQRQIQ DLTEQQKKCK CMAMSLHSND  240
K
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021767187.17e-97transcription factor bHLH81-like
SwissprotQ9C8P81e-67BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A0K9QRI52e-91A0A0K9QRI5_SPIOL; Uncharacterized protein
STRINGXP_010682704.12e-91(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09180.13e-56bHLH family protein