PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_032388
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WOX
Protein Properties Length: 290aa    MW: 32508.6 Da    PI: 6.3155
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_032388genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox629.3e-203191357
                 --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 +R+t+t++q+++L+el+++   r psa+++++++++l    +++ ++V++WFqN++a+e++
  DCAR_032388 31 TRWTPTSDQIRILKELYYNngIRSPSADQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 91
                 8*****************8567*************************************97 PP
2Wus_type_Homeobox113.79e-372993265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt++Qi+iL+ely+ +G+r+P++++iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
        DCAR_032388 29 TSTRWTPTSDQIRILKELYYnNGIRSPSADQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 93
                       789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.59E-111793IPR009057Homeodomain-like
PROSITE profilePS5007110.4792692IPR001356Homeobox domain
SMARTSM003896.9E-62896IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-73191IPR009057Homeodomain-like
CDDcd000861.26E-73193No hitNo description
PfamPF000462.5E-173191IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEAQQNNVHD QDGNNNNNMK APSFLCRQTS TRWTPTSDQI RILKELYYNN GIRSPSADQI  60
QRISARLRQY GKIEGKNVFY WFQNHKARER QKKRFTTSTA NDHFMNISSA PTAAQPPSSF  120
HRNINTLNPG HWRSTEDHSI LYNTPYPPSY ITHHSPGMIP SSSHAPPFAA VGHHMASYGY  180
GSMAMEQSFR ECSISPKDED SSGISNNICP YPFLEMINST LDEEEDEDGG DESREMATLP  240
LFPMHGEEEY NFTSSSRGHF YGGWYPSDSF AGSSARASLE LSLNSGGTS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017229010.10.0PREDICTED: protein WUSCHEL
SwissprotQ8LL112e-67WUS_PETHY; Protein WUSCHEL
TrEMBLA0A175YA300.0A0A175YA30_DAUCS; Uncharacterized protein
STRINGEMJ043772e-72(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76042331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.14e-47WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]