PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_031077
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 288aa    MW: 32265.2 Da    PI: 7.5588
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_031077genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.21.9e-10126173455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   K+ +L + ++YI+sLq
  DCAR_031077 126 SHSLAERARREKISERMKILQDLVPGC----NKVIGKSLVLDEIINYIQSLQ 173
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.66E-9120177No hitNo description
SuperFamilySSF474592.36E-17120190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.478122172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-17122190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-8126173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10128178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDPPAMSAFR SDNATTPYSL TEIWPFQFGQ FSDNPTREDD PIGVEQRGEK KRRNDDVSTS  60
TAPNVMIDSD GKRIKGSGSR DDNPESKVET EAKSAGKQSE QSVKPNEPPK QDYIHVRARR  120
GQATDSHSLA ERARREKISE RMKILQDLVP GCNKVIGKSL VLDEIINYIQ SLQRQVEFLS  180
MKLEAVNSKM SPSIEGFPSK DEHKLRSNVP HIRARLVSMN RVNRESIDFS VPCVATWCLL  240
FAYESFGQQA FDMAGVTFNS QAPRELSRGS SPEWLHMQIG GNFDRSA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017226502.11e-172PREDICTED: transcription factor bHLH79 isoform X2
SwissprotQ84T088e-70BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A175YK610.0A0A175YK61_DAUCS; Uncharacterized protein
STRINGLus100132844e-95(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-74BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]