PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_031059
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 270aa    MW: 30727.1 Da    PI: 4.3261
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_031059genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.27e-194093356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 k++++t +q++ Le+ Fe ++++  +++ +LAk lgL+ rqV +WFqNrRa++k
  DCAR_031059 40 KKRRLTVDQVKYLEKSFEVENKLEPDRKVQLAKDLGLQPRQVAIWFQNRRARYK 93
                 56689************************************************9 PP
2HD-ZIP_I/II133.86.1e-4339130192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrl+ +qvk LE+sFe e+kLep+rKv+la++Lglqprqva+WFqnrRAR+ktkqlEkdy++Lk++yd+l+++++rL+ke+e+Lr e++
  DCAR_031059  39 EKKRRLTVDQVKYLEKSFEVENKLEPDRKVQLAKDLGLQPRQVAIWFQNRRARYKTKQLEKDYDSLKECYDKLRDDHDRLSKENEKLRLEVE 130
                  69**************************************************************************************8886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.85E-193097IPR009057Homeodomain-like
PROSITE profilePS5007116.9893595IPR001356Homeobox domain
SMARTSM003893.0E-183899IPR001356Homeobox domain
CDDcd000868.42E-174096No hitNo description
PfamPF000465.1E-164093IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-1942103IPR009057Homeodomain-like
PRINTSPR000316.8E-66675IPR000047Helix-turn-helix motif
PROSITE patternPS0002707093IPR017970Homeobox, conserved site
PRINTSPR000316.8E-67591IPR000047Helix-turn-helix motif
PfamPF021837.1E-1695136IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MVHLQNSPPE NGRLGGFLPC LEKEENGIED YDPCLHPPEK KRRLTVDQVK YLEKSFEVEN  60
KLEPDRKVQL AKDLGLQPRQ VAIWFQNRRA RYKTKQLEKD YDSLKECYDK LRDDHDRLSK  120
ENEKLRLEVE SLKGKVPGAE KQSLDVTNSD DPEPTEVPPH TSSISQNVIS ENVMVIKQED  180
ANSAKSDVFD SESPPCADAN LVSLFQPVDS SRVLDQDPSD FSQDDEDDSC RILPPPCLPK  240
LEIESYEDLN ADTCNLGSSV DDQTFWFWS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18795RRARYKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDARKUROA0.0D26573.1 Daucus carota mRNA for DNA-binding protein (transcriptional regulator), complete cds, CHB1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017227452.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like
SwissprotQ022831e-44HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A175YJS30.0A0A175YJS3_DAUCS; Uncharacterized protein
STRINGXP_007157405.16e-84(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-46homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]