PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_031027

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TCP

Protein Properties

Length: 372aa MW: 40121.4 Da PI: 7.3039

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_031027	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.7	1e-38	53	150	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.........k 89 ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++ + s +ss+s+ s++ + DCAR_031027 53 PPKRASTKDRHTKVEGRGRRIRMPATCAARVFQLTKELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSTMSAPslrssylhsS 150 789******************************************************************99977777777777555554433332220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-36	58	166	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.529	59	113	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MEGENNMRRP NFVPLQLLEK RDDEACSSSG FGFSGAETKL SPPVTTEISK KPPPKRASTK 60 DRHTKVEGRG RRIRMPATCA ARVFQLTKEL GHKSDGETIE WLLQQAEPSV IAATGTGTIP 120 ANFTSLNISL RSSGSTMSAP SLRSSYLHSS LANSSRIRSD WERSIEESQR RIFGLASASE 180 NNSYSVGQPF NFGNSYMSLN SLLNAKQELR DTCLESEDGL TGRKRRSDDE DLSLENQMGP 240 GNYMLQSSSG SIPASSQGHT PSATFYMVTN PSTQLVNGGV DPMWTFQNAM NSNNNTSSTN 300 MYRGANSSVT NSGLHFMNLH TPMALLPSQQ LGSGGGGVAM PDGHLGMLAA LNSFRPISES 360 SHEASGSDRH D*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MEGENNMRRP NFVPLQLLEK RDDEACSSSG FGFSGAETKL SPPVTTEISK KPPPKRASTK  60
DRHTKVEGRG RRIRMPATCA ARVFQLTKEL GHKSDGETIE WLLQQAEPSV IAATGTGTIP  120
ANFTSLNISL RSSGSTMSAP SLRSSYLHSS LANSSRIRSD WERSIEESQR RIFGLASASE  180
NNSYSVGQPF NFGNSYMSLN SLLNAKQELR DTCLESEDGL TGRKRRSDDE DLSLENQMGP  240
GNYMLQSSSG SIPASSQGHT PSATFYMVTN PSTQLVNGGV DPMWTFQNAM NSNNNTSSTN  300
MYRGANSSVT NSGLHFMNLH TPMALLPSQQ LGSGGGGVAM PDGHLGMLAA LNSFRPISES  360
SHEASGSDRH D*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017224584.1	0.0	PREDICTED: transcription factor TCP15-like
Refseq	XP_017224598.1	0.0	PREDICTED: transcription factor TCP15-like
TrEMBL	A0A175YIU5	0.0	A0A175YIU5_DAUCS; Uncharacterized protein
STRING	EOY01975	1e-119	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2882	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	8e-51	TCP family protein

Link Out ? help Back to Top
Phytozome	DCAR_031027