PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_031001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | NAC | ||||||||
Protein Properties | Length: 239aa MW: 27448.8 Da PI: 8.7974 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104 | 1.9e-32 | 9 | 86 | 50 | 128 |
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+++s +g+ vg+kk Lvfy+g+ pkg+ktdW+mheyrl DCAR_031001 9 KAEFGENEWYFFSPRDRKYPNGARPNRAAVSGYWKATGTDKAIYS-GGKYVGVKKALVFYQGKPPKGTKTDWIMHEYRL 86 4555889**************************************.99*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 41.76 | 1 | 114 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.02E-40 | 11 | 114 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-15 | 15 | 86 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MTRLSRDKKA EFGENEWYFF SPRDRKYPNG ARPNRAAVSG YWKATGTDKA IYSGGKYVGV 60 KKALVFYQGK PPKGTKTDWI MHEYRLNESR SSPNKQHGSS MRLDDWVLCR IYKKKNTARV 120 CEDEPRVDDF RTNNYSVENV CANELPKMAC PNDLPKLEFP RTSSLSHLWE MDYFGSISQL 180 LNETTSYDAH NIMTMAPSRT TEMGEMSQAY ADSVKFQVNN ESSMLNQQSV FVNSIFEF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-51 | 9 | 119 | 68 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-51 | 9 | 119 | 68 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-51 | 9 | 119 | 68 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-51 | 9 | 119 | 68 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-51 | 9 | 119 | 68 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-51 | 9 | 119 | 68 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-51 | 9 | 119 | 68 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-51 | 9 | 119 | 68 | 173 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017224430.1 | 1e-174 | PREDICTED: NAC transcription factor 29-like | ||||
Swissprot | K4BWV2 | 2e-82 | NAP1_SOLLC; NAC domain-containing protein 1 | ||||
TrEMBL | A0A175YKR2 | 0.0 | A0A175YKR2_DAUCS; Uncharacterized protein | ||||
STRING | cassava4.1_013467m | 3e-88 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA746 | 24 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-70 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
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Phytozome | DCAR_031001 |
Publications ? help Back to Top | |||
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