PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_030778 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GATA | ||||||||
Protein Properties | Length: 244aa MW: 27633.3 Da PI: 8.1285 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59 | 6.2e-19 | 162 | 196 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C+t +TplWR gp g+ktLCnaCG++y++ +l DCAR_030778 162 CQHCQTEQTPLWRAGPMGPKTLCNACGVRYKSGRL 196 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 13.046 | 156 | 192 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 5.1E-18 | 156 | 206 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.13E-15 | 158 | 219 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.5E-16 | 160 | 194 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.31E-16 | 161 | 209 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 162 | 187 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.2E-16 | 162 | 196 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MEALDEFLNF SDEDEKTKLP LSSSPLFSFN GLKDDDPPSV TEFVEEELEW LSNKDAFPAL 60 ESCMDIILDQ SAIFQSDQNH LSPVSVLENS GTSYIGNLMV PTSFPVRGRS KRTRKRRRRF 120 PELSIRQPWQ WNQMSMEDLK QEHENPFVSK TVTRVATIGR KCQHCQTEQT PLWRAGPMGP 180 KTLCNACGVR YKSGRLVPEY RPASSPTFSS KLHSNSHKKI MEKRRQSQLS EMVVNGVCGY 240 GVG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 118 | KRTRKRRRR |
2 | 113 | 117 | RKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017224491.1 | 0.0 | PREDICTED: GATA transcription factor 1-like | ||||
Swissprot | Q8LAU9 | 3e-41 | GATA1_ARATH; GATA transcription factor 1 | ||||
TrEMBL | A0A175YI56 | 0.0 | A0A175YI56_DAUCS; Uncharacterized protein | ||||
STRING | XP_009365479.1 | 4e-56 | (Pyrus x bretschneideri) | ||||
STRING | XP_002518163.1 | 2e-56 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4076 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 1e-38 | GATA transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_030778 |