PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030770
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 274aa    MW: 31726.6 Da    PI: 8.8728
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030770genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.4e-181764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll+++vk++G g+W+++ar  g++R +k+c++rw +yl
      DCAR_030770 17 KGPWTSEEDRLLIEYVKLHGEGRWNSVARLQGLKRNGKSCRLRWVNYL 64
                     79******************************99************97 PP
2Myb_DNA-binding48.81.6e-1570114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+  ++++++++G++ W+tIar ++ gRt++++k++w+++
      DCAR_030770  70 RGQITPNEESVIIELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.9111268IPR017930Myb domain
SuperFamilySSF466892.66E-3014111IPR009057Homeodomain-like
SMARTSM007172.3E-161666IPR001005SANT/Myb domain
PfamPF002491.4E-161764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-231871IPR009057Homeodomain-like
CDDcd001671.96E-121964No hitNo description
SMARTSM007177.8E-1369117IPR001005SANT/Myb domain
PROSITE profilePS5129418.87569119IPR017930Myb domain
PfamPF002493.4E-1370114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2472118IPR009057Homeodomain-like
CDDcd001673.03E-974115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MTENMGWGVL EAQGWRKGPW TSEEDRLLIE YVKLHGEGRW NSVARLQGLK RNGKSCRLRW  60
VNYLRPDLKR GQITPNEESV IIELHARWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKTK  120
VSPSDANKSK ARMLKRQQFQ QQQLLLQQQQ QYEVDMQRIM SNLRDQTEVP IPSLPQHQLM  180
MKPQDSVASS NNCTQTVNSD QGRYDYSSMT MVSHFNDCAS VAESSSDQDF FWDGNLWNLD  240
DIQGNFSEVP AANRAAAPLQ DFNSSPFMLF NCY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271711927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017225969.10.0PREDICTED: myb-related protein MYBAS2
TrEMBLA0A175YJ650.0A0A175YJ65_DAUCS; Uncharacterized protein
STRINGXP_004296547.12e-97(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.14e-78myb domain protein 305