PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_030476

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

GRAS

Protein Properties

Length: 756aa MW: 85568 Da PI: 5.6734

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_030476	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	262.1	1.9e-80	382	753	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl....fsevsPilkf 93 lv+ Ll Ae v ++ +a++lL l+sp+g+p+qRl+ yf++AL++++++++ + + + ++ +++e+l++ + f++ P+ ++ DCAR_030476 382 LVQILLMSAEKVGRQQYDCASKLLDLCDGLSSPEGNPVQRLVYYFVKALREKIYHETGVIPSNClDIKHFF--DVKEALMSPTPtvisFHKEVPFSQI 477 68999***********************************************95444433332444444..355555544324566****** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 +++ q I+e v +++rvHiiD++i G+Q + L+qaL +R+ ++ ++++T++g +ske++eetg+rL fA ++++pf+fnv+++ ++ +l+ DCAR_030476 478 NQFIGVQVIVENVGEAKRVHIIDLEIRSGMQCMVLMQALVNRRqSPLDHFKVTALGT---KSKEKIEETGRRLMTFAMSMNIPFSFNVIMVADMLALN 572 ************************************88835566*****...68******************************** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 + + ++p+E++aV +++ l +ll+ + +le ++ ++++++P ++v++e ea+hns+ F++rf+eal +y ++fd++e +++++ +r + E + DCAR_030476 573 KSLFTLDPREVVAVVSSYYLWTLLAVPNQLEC----LMGVIRKINPCIMVITEVEAKHNSPVFVNRFTEALFFYGVFFDAVEDCMGHKNPNRLTTESM 666 ********************88777777....********************************************************** PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +l++ i+ +va+e++er+ rh + + Wr+ + ++ + + +ls + qa+l+l++++ s+ ++ +++ l++gWk+ p+ s++ W+ DCAR_030476 667 FLNQGIRTIVAAEKEERTIRHVSIAVWRAFFARFRMVEKQLSMSSLYQADLVLKNFScSNSCTLVRDEKGLIIGWKGTPVHSLTTWK 753 ************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	37.529	356	732	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.6E-78	382	753	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence Send to blast
MSEILPIEQL SFTEIYNHCN NFQTHEWGMS KEVKYENQSV KEEFFSSDPL QEQPVEFFSE 60 IKGFDESFSD IKYLPVEQCH KVRKISNGQR MAGAESVRET TRTIPLAGLE ILNNYGSRFS 120 LSHGEMEIAS SYEIAQTKVG VRQLTTDGIL RLAGEKFIRS CSPRNADLSL LVGPISSSFP 180 CLTDDEVNDV ELVQILLMSA EKVGXTWLHF EPLTHEWGMS KEVKYENQSV KEEFFSSDPL 240 QEQPVEFFSE IKGFDESFSD IKYLPVEQCH KVRKISNGQR MAGAESVRET TRTIPLAGLE 300 ILNNYGSRFS LSHGEMEIAS SYEIAQTKVG VRQLTTDGIL RLAGEKFIRS CSPRNADLSL 360 LVGPISSSFP CLTDDEVNDV ELVQILLMSA EKVGRQQYDC ASKLLDLCDG LSSPEGNPVQ 420 RLVYYFVKAL REKIYHETGV IPSNCLDIKH FFDVKEALMS PTPTVISFHK EVPFSQINQF 480 IGVQVIVENV GEAKRVHIID LEIRSGMQCM VLMQALVNRR QSPLDHFKVT ALGTKSKEKI 540 EETGRRLMTF AMSMNIPFSF NVIMVADMLA LNKSLFTLDP REVVAVVSSY YLWTLLAVPN 600 QLECLMGVIR KINPCIMVIT EVEAKHNSPV FVNRFTEALF FYGVFFDAVE DCMGHKNPNR 660 LTTESMFLNQ GIRTIVAAEK EERTIRHVSI AVWRAFFARF RMVEKQLSMS SLYQADLVLK 720 NFSCSNSCTL VRDEKGLIIG WKGTPVHSLT TWKFL*

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence Send to blast

MSEILPIEQL SFTEIYNHCN NFQTHEWGMS KEVKYENQSV KEEFFSSDPL QEQPVEFFSE  60
IKGFDESFSD IKYLPVEQCH KVRKISNGQR MAGAESVRET TRTIPLAGLE ILNNYGSRFS  120
LSHGEMEIAS SYEIAQTKVG VRQLTTDGIL RLAGEKFIRS CSPRNADLSL LVGPISSSFP  180
CLTDDEVNDV ELVQILLMSA EKVGXTWLHF EPLTHEWGMS KEVKYENQSV KEEFFSSDPL  240
QEQPVEFFSE IKGFDESFSD IKYLPVEQCH KVRKISNGQR MAGAESVRET TRTIPLAGLE  300
ILNNYGSRFS LSHGEMEIAS SYEIAQTKVG VRQLTTDGIL RLAGEKFIRS CSPRNADLSL  360
LVGPISSSFP CLTDDEVNDV ELVQILLMSA EKVGRQQYDC ASKLLDLCDG LSSPEGNPVQ  420
RLVYYFVKAL REKIYHETGV IPSNCLDIKH FFDVKEALMS PTPTVISFHK EVPFSQINQF  480
IGVQVIVENV GEAKRVHIID LEIRSGMQCM VLMQALVNRR QSPLDHFKVT ALGTKSKEKI  540
EETGRRLMTF AMSMNIPFSF NVIMVADMLA LNKSLFTLDP REVVAVVSSY YLWTLLAVPN  600
QLECLMGVIR KINPCIMVIT EVEAKHNSPV FVNRFTEALF FYGVFFDAVE DCMGHKNPNR  660
LTTESMFLNQ GIRTIVAAEK EERTIRHVSI AVWRAFFARF RMVEKQLSMS SLYQADLVLK  720
NFSCSNSCTL VRDEKGLIIG WKGTPVHSLT TWKFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-34	387	753	8	375	GRAS family transcription factor containing protein, expressed

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017225357.1	0.0	PREDICTED: DELLA protein RGL1-like
TrEMBL	A0A175YHP8	0.0	A0A175YHP8_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3427	21	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	8e-53	RGA-like 2

Link Out ? help Back to Top
Phytozome	DCAR_030476