PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029465
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 202aa    MW: 22644 Da    PI: 7.1466
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029465genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552.1e-1791141255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIr p +  k  r++lg+++ +e+Aa a+++a+ +l+g
  DCAR_029465  91 RYRGVRRRP-WGKFAAEIRNPAK--KGGRIWLGTYDKPEDAALAYDRAAFQLRG 141
                  8********.**********855..339************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.72E-3190150No hitNo description
PfamPF008473.7E-1291141IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-2291150IPR016177DNA-binding domain
SMARTSM003805.0E-3591155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-3091150IPR001471AP2/ERF domain
PROSITE profilePS5103223.53891149IPR001471AP2/ERF domain
PRINTSPR003674.5E-1392103IPR001471AP2/ERF domain
PRINTSPR003674.5E-13131151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MFSQTLSSSD LAVLESIRHH LLEDPENISD YFPSTSSCNA QVDEQSITTF CNLIFEENSH  60
EEIKNGKHVD HRSTKEFDKS LKAHSQLNWK RYRGVRRRPW GKFAAEIRNP AKKGGRIWLG  120
TYDKPEDAAL AYDRAAFQLR GSRAKVNFPN MVGSDSSSET VNVIKNKRTA PEPSLSPVSS  180
TDISSEKGRN NSENIPDEDL S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2990149160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017226077.11e-149PREDICTED: ethylene-responsive transcription factor 13-like
TrEMBLA0A175YG961e-148A0A175YG96_DAUCS; Uncharacterized protein
STRINGXP_009593489.11e-41(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.16e-38ethylene-responsive element binding factor 13