PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_029463 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 202aa MW: 22927.3 Da PI: 4.3317 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.5e-19 | 90 | 141 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIr p ++g +r++lg+++t+e+Aa a+++a+ k++g+ DCAR_029463 90 RYRGVRRRP-WGKFAAEIRNPAKRG--ARIWLGTYDTPEDAALAYDRAAFKIRGA 141 8********.**********97765..*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.42E-32 | 89 | 148 | No hit | No description |
PROSITE profile | PS51032 | 24.408 | 90 | 148 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-31 | 90 | 149 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.1E-36 | 90 | 154 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.6E-14 | 90 | 140 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 90 | 149 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.3E-10 | 91 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 114 | 130 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MTSYNLPDPD FSALESIRQH LLEDADNFDT ITSSDPLVYE RNLSFGSTDS GGTDSVEDYT 60 MEWMDMLRDA DAKQDFVQEL SAEKQPEWKR YRGVRRRPWG KFAAEIRNPA KRGARIWLGT 120 YDTPEDAALA YDRAAFKIRG ARAKVNFPKL LVPDLSQKFD VDANRLTSEP ESSTSYNHSP 180 GENLEEMFTL TDEDLLLIDS L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-28 | 89 | 148 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-28 | 89 | 148 | 4 | 63 | ATERF1 |
3gcc_A | 1e-28 | 89 | 148 | 4 | 63 | ATERF1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017225948.1 | 1e-147 | PREDICTED: ethylene-responsive transcription factor 13-like | ||||
TrEMBL | A0A175YF08 | 1e-145 | A0A175YF08_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 2e-33 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_029463 |