PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029122
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 312aa    MW: 34896.9 Da    PI: 5.0128
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029122genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-112372771055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  ++RR+riN++f +L+ l+P+      +K++ +++Le AveY+k Lq
  DCAR_029122 237 KKRRERINEKFRTLQNLVPNG-----TKVDISTMLEDAVEYVKFLQ 277
                  89*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.301227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-14229289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-13232286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-12233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-11236281No hitNo description
PfamPF000101.2E-8237277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MESFGSILEG DWSSLDAMYS AEESEFTAQL LNYCSIPNDL HFDPSFRIFS DNADIDHFAL  60
GNTCFYPTLK HDSCYAGDFR HILAASDDFV FCNEDIEGEN LSSVQILSSG DVYENVLMQL  120
ELEGHVADRV SDEEVVLSNS VQKSKKRSAN SGDVQINKRR VKAKKNQKIE RKDCMNNKEK  180
NAAMQKRSLS NDSMVSHELN GTASNSPDSK EVTPVNSNGE VRAARGSATD PQSLYAKKRR  240
ERINEKFRTL QNLVPNGTKV DISTMLEDAV EYVKFLQLQI KLLSSDKWMY APIAYNGIDL  300
GLDSNLSRPL H*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017224803.10.0PREDICTED: transcription factor bHLH139-like
TrEMBLA0A175YD170.0A0A175YD17_DAUCS; Uncharacterized protein
STRINGPOPTR_0009s09210.12e-74(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.16e-54ROOT HAIR DEFECTIVE 6-LIKE 2