PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029031
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 436aa    MW: 49232.5 Da    PI: 6.3377
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029031genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87e-1768158199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f+k ++ps+v    +l lpkkf e h  +k  +kt++l de+  + e k+  +k++    l++GW++F  a++Lke+D++vF+l+++ +f  +v ++r
  DCAR_029031  68 FVKNMLPSHVAGGFWLGLPKKFSEMHL-PK-HDKTVVLVDETELEHETKYLAEKTG----LSGGWRGFSIAHKLKEKDVLVFHLIQECKF--KVYIVR 157
                  89*********************9994.33.5679***************555555....**************************9999..888877 PP

                  S CS
           B3  99 k 99 
                  +
  DCAR_029031 158 A 158
                  5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-2062159IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-2363159IPR015300DNA-binding pseudobarrel domain
CDDcd100175.51E-2566157No hitNo description
SMARTSM010198.6E-2368159IPR003340B3 DNA binding domain
PROSITE profilePS5086311.36468159IPR003340B3 DNA binding domain
PfamPF023622.5E-1468158IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MQNNKALDTK KKILKNREHK TTVSSDLDKG IAPKVETGDG HEFDGEKSSP MDRALEIQAN  60
LASKFPSFVK NMLPSHVAGG FWLGLPKKFS EMHLPKHDKT VVLVDETELE HETKYLAEKT  120
GLSGGWRGFS IAHKLKEKDV LVFHLIQECK FKVYIVRANA LSEIDGAISL LNLGARVTKM  180
NGVSAFDMNL KNLYEEGLKI TVMAPEEHFN QYSPVHSVQE KDMVALRNNV DAAADNYKMD  240
TDNSGSDDVD GIRFAHSVVD FKDVKGYENF SIIVDRLIID CEIPHDLRVK YYELCCSQNS  300
YLHDELIDGL NLRLVVGVIF EIISIADAIR SSKTRKCEDL KAWDNSLKAF EILGMKVGFL  360
RARINKLLIL SSDLEDALKR KIVEKAKAEE ELEVLEIKRS RVKELIENSD YEIQAMKKKS  420
KNLEAAFLEE SQAPW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1482281e-106FJ148228.1 Daucus carota subsp. sativus clone BAC C014A03 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017226027.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A175YE190.0A0A175YE19_DAUCS; Uncharacterized protein
STRINGSolyc06g034140.1.11e-127(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30232343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-40B3 family protein