PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_029029

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Protein Properties

Length: 457aa MW: 51032.9 Da PI: 5.9353

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_029029	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.1	6e-17	98	188	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k++++s+v +l lpkkf+e + + +e++ ++l des + e k+ +k++ l++GW++F a++L+e+D++vF+l++ ef+++v ++r DCAR_029029 98 FVKKMLTSHVAGCFWLGLPKKFTEMYL-P-KEDVIVVLVDESEGEHETKYLAEKSG----LSGGWRGFSVAHNLQENDVLVFHLIQ--EFRFKVYIVR 187 89*******************9995.3.36799***********656665....9********************998..6777999988 PP S CS B3 99 k 99 + DCAR_029029 188 A 188 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.7E-19	92	189	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.96E-23	93	189	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.11E-27	96	187	No hit	No description
Pfam	PF02362	3.2E-14	98	188	IPR003340	B3 DNA binding domain
SMART	SM01019	9.7E-25	98	189	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.491	98	189	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MSEEKSLKAL MAIPQDQPSS KNNKALDPKK NNFKNRDGDG IQASKHKKVV SFNLDKSIVS 60 YQPKIGASDS QGFHLNISSP VDRALDIKAN LASNFPSFVK KMLTSHVAGC FWLGLPKKFT 120 EMYLPKEDVI VVLVDESEGE HETKYLAEKS GLSGGWRGFS VAHNLQENDV LVFHLIQEFR 180 FKVYIVRANA LSEVDGATDL LNLGACERKT ESDDHQEGMK TTALAPEEHL KQYSRVHNAQ 240 EKDMVALSNN IDAAVDNSGM NFDNSGSDDL YGLWIASSVT NFKDVKNFEN FSVTVDRIIL 300 DNEIPHDRRV KYYQLCCSQK SYLHDQLIEM LSLHLVVGII LETVSISDAI SSSKPSSYRD 360 LKAWDDTLKS FEILGMKVGF LRAKIVKLLT LSSDSEDALQ CKIVEKANAE GELKALEIRR 420 SSLKEVIENL AHEIEAMKIK AQNIEAAFQE ESKAPW*

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MSEEKSLKAL MAIPQDQPSS KNNKALDPKK NNFKNRDGDG IQASKHKKVV SFNLDKSIVS  60
YQPKIGASDS QGFHLNISSP VDRALDIKAN LASNFPSFVK KMLTSHVAGC FWLGLPKKFT  120
EMYLPKEDVI VVLVDESEGE HETKYLAEKS GLSGGWRGFS VAHNLQENDV LVFHLIQEFR  180
FKVYIVRANA LSEVDGATDL LNLGACERKT ESDDHQEGMK TTALAPEEHL KQYSRVHNAQ  240
EKDMVALSNN IDAAVDNSGM NFDNSGSDDL YGLWIASSVT NFKDVKNFEN FSVTVDRIIL  300
DNEIPHDRRV KYYQLCCSQK SYLHDQLIEM LSLHLVVGII LETVSISDAI SSSKPSSYRD  360
LKAWDDTLKS FEILGMKVGF LRAKIVKLLT LSSDSEDALQ CKIVEKANAE GELKALEIRR  420
SSLKEVIENL AHEIEAMKIK AQNIEAAFQE ESKAPW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017226027.1	0.0	PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBL	A0A175YCS9	0.0	A0A175YCS9_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3023	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-38	B3 family protein

Link Out ? help Back to Top
Phytozome	DCAR_029029